Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   N0J69_RS07715 Genome accession   NZ_CP104020
Coordinates   1528694..1529263 (-) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 0831     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1523694..1534263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N0J69_RS07675 - 1524168..1524776 (-) 609 WP_000020304.1 class I SAM-dependent methyltransferase -
  N0J69_RS07680 rplL 1524951..1525319 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  N0J69_RS07685 rplJ 1525362..1525862 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  N0J69_RS07690 rplA 1526134..1526826 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  N0J69_RS07695 rplK 1527034..1527456 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  N0J69_RS07700 nusG 1527637..1528185 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  N0J69_RS07705 secE 1528198..1528380 (-) 183 WP_001074474.1 preprotein translocase subunit SecE -
  N0J69_RS07710 rpmG 1528436..1528579 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  N0J69_RS07715 sigH 1528694..1529263 (-) 570 WP_000872873.1 sigma-70 family RNA polymerase sigma factor Regulator
  N0J69_RS07720 - 1529344..1529868 (-) 525 WP_000664738.1 NYN domain-containing protein -
  N0J69_RS07725 rlmB 1529868..1530614 (-) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  N0J69_RS07730 - 1530622..1531026 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  N0J69_RS07735 cysS 1531019..1532419 (-) 1401 WP_000631963.1 cysteine--tRNA ligase -
  N0J69_RS07740 cysE 1532403..1533050 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=727066 N0J69_RS07715 WP_000872873.1 1528694..1529263(-) (sigH) [Staphylococcus aureus strain 0831]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=727066 N0J69_RS07715 WP_000872873.1 1528694..1529263(-) (sigH) [Staphylococcus aureus strain 0831]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984