Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   N0B18_RS11720 Genome accession   NZ_CP103995
Coordinates   2186636..2187256 (+) Length   206 a.a.
NCBI ID   WP_069964189.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM117109     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2181636..2192256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N0B18_RS11680 (N0B18_11680) ptsA 2182767..2183273 (-) 507 WP_044052678.1 PTS glucose transporter subunit IIA -
  N0B18_RS11685 (N0B18_11685) ypqA 2183411..2183830 (+) 420 WP_042976351.1 Hsp20/alpha crystallin family protein -
  N0B18_RS11690 (N0B18_11690) sppG 2183851..2184228 (-) 378 WP_015251832.1 YppG family protein -
  N0B18_RS11695 (N0B18_11695) yppF 2184416..2184604 (+) 189 WP_003230690.1 YppF family protein -
  N0B18_RS11700 (N0B18_11700) yppE 2184643..2185014 (-) 372 WP_021481525.1 YppE family protein -
  N0B18_RS11705 (N0B18_11705) yppD 2185060..2185305 (-) 246 WP_021481526.1 DUF5446 family protein -
  N0B18_RS11710 (N0B18_11710) sspM 2185504..2185608 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  N0B18_RS11715 (N0B18_11715) yppC 2185633..2186595 (-) 963 WP_033881326.1 DUF2515 domain-containing protein -
  N0B18_RS11720 (N0B18_11720) recU 2186636..2187256 (+) 621 WP_069964189.1 Holliday junction resolvase RecU Machinery gene
  N0B18_RS11725 (N0B18_11725) ponA 2187278..2190022 (+) 2745 WP_046160510.1 transglycosylase domain-containing protein -
  N0B18_RS11730 (N0B18_11730) ypoC 2190098..2190592 (-) 495 WP_009967579.1 YpoC family protein -
  N0B18_RS11735 (N0B18_11735) nth 2190589..2191248 (-) 660 WP_009967580.1 endonuclease III -
  N0B18_RS11740 (N0B18_11740) dnaD 2191267..2191965 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 24067.23 Da        Isoelectric Point: 9.6240

>NTDB_id=726836 N0B18_RS11720 WP_069964189.1 2186636..2187256(+) (recU) [Bacillus subtilis strain SRCM117109]
MIRYPNGKTFQPKHSFSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPIFLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=726836 N0B18_RS11720 WP_069964189.1 2186636..2187256(+) (recU) [Bacillus subtilis strain SRCM117109]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGTTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTATATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTTTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.029

100

0.99