Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   NY023_RS07940 Genome accession   NZ_CP103994
Coordinates   1698167..1700380 (+) Length   737 a.a.
NCBI ID   WP_044047228.1    Uniprot ID   A0AA96YFM7
Organism   Pseudomonas sp. NBB     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1693167..1705380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NY023_RS07920 (NY023_07930) - 1695032..1695655 (+) 624 WP_013971559.1 glutathione S-transferase -
  NY023_RS07925 (NY023_07935) - 1695800..1696732 (+) 933 WP_013971560.1 ABC transporter ATP-binding protein -
  NY023_RS07930 (NY023_07940) - 1696729..1697508 (+) 780 WP_003260104.1 ABC transporter permease -
  NY023_RS07935 (NY023_07945) - 1697518..1698024 (-) 507 Protein_1546 DUF2062 domain-containing protein -
  NY023_RS07940 (NY023_07950) comA 1698167..1700380 (+) 2214 WP_044047228.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NY023_RS07945 (NY023_07955) exbB 1700599..1701234 (+) 636 WP_003259970.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  NY023_RS07950 (NY023_07960) - 1701231..1701665 (+) 435 WP_013971564.1 ExbD/TolR family protein -
  NY023_RS07955 (NY023_07965) lpxK 1701665..1702666 (+) 1002 WP_013971565.1 tetraacyldisaccharide 4'-kinase -
  NY023_RS07960 (NY023_07970) - 1702711..1702896 (+) 186 WP_011532874.1 Trm112 family protein -
  NY023_RS07965 (NY023_07975) kdsB 1702893..1703657 (+) 765 WP_013971566.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NY023_RS07970 (NY023_07980) - 1703657..1704121 (+) 465 WP_013971567.1 low molecular weight protein-tyrosine-phosphatase -
  NY023_RS07975 (NY023_07985) murB 1704118..1705137 (+) 1020 WP_044046919.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79428.31 Da        Isoelectric Point: 10.6587

>NTDB_id=726785 NY023_RS07940 WP_044047228.1 1698167..1700380(+) (comA) [Pseudomonas sp. NBB]
MRTGMFALALGLLCLGFLPALPSVGWLVLLAVVGGLGLFTRLWPLGCFLLGLCWACWSAQQALDDRLATGLDGRTLWLEG
RVVGLPTRTAQGVRFELDAARSRRAELPQRLQLSWFDGPPLRAGEQWRLAVTLQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPVAGGWRDTLRQRLLAVDANGRQAALVALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPWACGLAMAAALVYGWLAGGGVPVQRACLMLAVVLLWRLRFRQLGATLPLLLALVAVLLLEPL
AALLPGFWLSFAAVATLVYCFSARLGNWRPWQAWTRAQWVIAIGLLPVLLATGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLLLPLGGVGEALLWLAGGLLDVLFRLLALAAQQPAWLPPAVPLWAWLLVCLGALLVLMPRGVPLRGLGGVMLLALWV
PRETVPFGQVEVWQLDVGQGLAVLLRTRHHNLLYDAGPARGESDLGERLVLPTLRKLGVGSLDLMLVSHAHADHAGGAGA
IIRGLPVKRLIGGEVLDDMQLQPCASGEQWTWDGVRFSLWRWADGQSSNDRSCALLVEAQGERLLLAGDMEAGAERAWLA
ATEAPRIDWLQSPHHGSRSSSSEAFIRATAPRGVLISRGRNNSFGHPHAQVVERYRRHGVVMHDTAEQGALRLVLGRLGE
VESVRRQRRFWRDAGGG

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=726785 NY023_RS07940 WP_044047228.1 1698167..1700380(+) (comA) [Pseudomonas sp. NBB]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTGTGTCTGGGCTTTCTCCCCGCATTGCCATCGGTCGGATGGCT
GGTGCTGCTGGCTGTAGTCGGTGGCCTCGGCCTGTTCACGCGGCTGTGGCCGCTGGGCTGTTTTCTGTTGGGCCTGTGTT
GGGCCTGCTGGTCTGCGCAGCAGGCCCTGGATGACCGCCTGGCCACCGGGCTGGATGGTCGCACCTTGTGGCTTGAGGGC
CGGGTGGTCGGCCTGCCGACCCGGACTGCGCAGGGTGTGCGCTTCGAGCTGGACGCGGCCCGCTCGCGGCGGGCAGAGCT
GCCGCAGCGCCTGCAACTGAGCTGGTTCGACGGCCCGCCGCTGCGCGCGGGCGAGCAGTGGCGGCTGGCGGTGACCTTGC
AGCGCCCGGCCGGGCTGCTCAACCCGCATGGGCCGGACCGTGAGGCGCAATTGCTGGCGCGGCGGGTCGGTGCGACCGGT
ACGGTCAAGGCCGGGCAGTTGCTGGCGCCGGTTGCCGGCGGCTGGCGCGACACGCTGCGCCAGCGCCTGCTGGCAGTGGA
CGCCAATGGCCGGCAGGCAGCGTTGGTGGCGCTGGTGCTTGGCGACGGCGCGGGCCTGGCCCGGGAGGACTGGCAAACGT
TGCAGGCCACCGGCACGGTGCACCTGCTGGTGATCTCCGGCCAGCACATCGGCTTGGTTGCCGGCTTGCTGTATGGCCTG
GTTGCCGGGCTGGCGCGTTGGGGGCTGTGGCCCGCTCGTCTGCCGTGGCTGCCCTGGGCGTGTGGCTTGGCCATGGCTGC
TGCACTGGTCTACGGTTGGTTGGCTGGTGGCGGTGTACCGGTGCAGCGTGCCTGCCTGATGCTGGCCGTGGTGTTGCTCT
GGCGCCTGCGTTTTCGCCAACTGGGTGCGACCTTGCCGTTGTTGCTGGCGCTGGTTGCCGTACTGTTGCTGGAACCGTTG
GCCGCGCTGCTGCCCGGGTTCTGGCTATCGTTCGCGGCCGTGGCCACGCTTGTCTATTGCTTCAGTGCCCGCCTGGGCAA
CTGGCGGCCCTGGCAGGCCTGGACGCGGGCGCAATGGGTGATTGCGATCGGCTTGTTGCCGGTACTGCTGGCTACGGGCT
TGCCGGTGAGCTTGAGTGCGCCGCTGGCCAACCTTGTTGCGGTGCCGTGGGTCAGCTTGGCAGTGCTGCCATTGGCGTTG
CTGGGCACTTTGCTGCTGCCGTTGGGCGGGGTAGGGGAGGCGCTGCTCTGGCTGGCGGGTGGTTTGCTTGATGTGCTTTT
CCGGCTGCTGGCGCTGGCGGCCCAGCAGCCGGCGTGGCTGCCACCAGCCGTGCCGTTGTGGGCCTGGCTGCTGGTGTGCC
TGGGTGCGCTGCTGGTTTTGATGCCCCGTGGCGTACCACTGCGCGGGTTGGGTGGCGTAATGCTGCTGGCGCTGTGGGTA
CCCCGGGAGACGGTGCCGTTCGGCCAGGTCGAGGTCTGGCAGCTGGACGTCGGCCAGGGGCTGGCGGTGCTGTTGCGCAC
TCGGCATCACAACCTGCTGTACGACGCCGGGCCGGCCAGGGGAGAGAGCGACCTGGGCGAGCGGTTGGTGTTGCCGACCT
TGCGCAAGCTGGGGGTGGGCAGCCTGGACTTGATGCTGGTCAGCCACGCCCATGCCGACCACGCCGGTGGTGCTGGCGCA
ATCATACGTGGCCTGCCGGTTAAACGGCTGATCGGCGGCGAAGTGCTGGATGACATGCAACTGCAACCTTGTGCCAGTGG
CGAGCAATGGACGTGGGATGGCGTGCGCTTTTCGCTGTGGCGCTGGGCTGATGGACAGAGCAGCAATGACCGCTCCTGTG
CGTTGCTGGTCGAGGCGCAGGGTGAGCGGTTGTTGCTGGCGGGAGATATGGAAGCCGGTGCCGAACGGGCCTGGCTGGCG
GCCACAGAAGCGCCGCGGATCGACTGGCTGCAGTCGCCGCACCATGGCAGCCGCAGTTCGTCCAGCGAGGCCTTCATCCG
CGCCACGGCGCCGCGCGGGGTACTGATTTCGCGCGGGCGCAACAACAGCTTCGGGCACCCGCATGCGCAGGTGGTCGAAC
GTTATCGGCGGCATGGGGTGGTGATGCATGACACGGCGGAGCAGGGGGCGTTGCGGTTGGTGCTGGGGAGGCTGGGGGAG
GTCGAGAGTGTGCGCCGACAGCGGCGTTTCTGGAGGGATGCGGGCGGTGGCTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(496-673)

Competence protein (Competence)

(198-463)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.249

97.558

0.578
  comA Ralstonia pseudosolanacearum GMI1000

34.65

100

0.369