Detailed information NTG0726779

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NY023_RS03235
• Genome accession: NZ_CP103994
• Coordinates: 712182..713048 (-)
• Length: 288 a.a.
• NCBI ID: WP_044046883.1
• Uniprot ID: A0AA96YD38
• Organism: Pseudomonas sp. NBB
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 707182..718048

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NY023_RS03200 (NY023_03195)	-	707629..708924 (-)	1296	WP_003260618.1	NAD(P)/FAD-dependent oxidoreductase	-
NY023_RS03205 (NY023_03200)	-	709009..709182 (-)	174	WP_013970765.1	DUF3094 family protein	-
NY023_RS03210 (NY023_03205)	-	709316..709945 (-)	630	WP_013970766.1	DUF1780 domain-containing protein	-
NY023_RS03215 (NY023_03210)	-	710001..710432 (-)	432	WP_015268860.1	hypothetical protein	-
NY023_RS03220 (NY023_03215)	-	710519..711226 (+)	708	WP_013970768.1	energy-coupling factor ABC transporter permease	-
NY023_RS03225 (NY023_03220)	yacG	711362..711562 (-)	201	WP_003260624.1	DNA gyrase inhibitor YacG	-
NY023_RS03230 (NY023_03225)	coaE	711559..712182 (-)	624	WP_013970769.1	dephospho-CoA kinase	-
NY023_RS03235 (NY023_03230)	pilD	712182..713048 (-)	867	WP_044046883.1	prepilin peptidase	Machinery gene
NY023_RS03240 (NY023_03235)	-	713051..714259 (-)	1209	WP_013970771.1	type II secretion system F family protein	-
NY023_RS03245 (NY023_03240)	pilA	714475..714885 (+)	411	WP_013970772.1	pilin	Machinery gene
NY023_RS03255 (NY023_03250)	-	715194..716489 (+)	1296	WP_013970773.1	tyrosine-type recombinase/integrase	-
NY023_RS03260 (NY023_03255)	-	716740..717735 (+)	996	WP_013970774.1	hypothetical protein	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 32012.20 Da
• Isoelectric Point: 8.2287

>NTDB_id=726779 NY023_RS03235 WP_044046883.1 712182..713048(-) (pilD) [Pseudomonas sp. NBB]
MTLWTLLAEQPAYFLTLATVLGLLVGSFLNVLVYRLPIMLERQWQREAQEMLQLPITPHERFDLWLPASRCPHCAHRIRA
WENIPVISYLALRGRCSACKTRISPRYPLVELASALLSLVVAWRFGASPEALLALPLTWCLLALSLIDAEHQLLPDALVL
PMLWLGLIVNAFGLYVPLTSALWGAVAGYLSLWTVYWVFKLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA
LAGLCLLRLRRHAIGTAIPFGPYLAIAGWIAVLWGDEIYASYTNLLGF

Nucleotide

• Length: 867 bp

>NTDB_id=726779 NY023_RS03235 WP_044046883.1 712182..713048(-) (pilD) [Pseudomonas sp. NBB]
ATGACTTTATGGACTTTGCTGGCTGAGCAGCCGGCGTACTTTCTCACCCTGGCCACGGTGCTCGGTCTGCTGGTGGGCAG
TTTTCTCAACGTGCTGGTGTACCGCCTGCCGATCATGCTGGAGCGGCAATGGCAGCGTGAGGCGCAGGAAATGCTGCAGT
TGCCGATCACGCCGCACGAGCGTTTCGACCTGTGGCTACCCGCCTCGCGCTGCCCCCATTGTGCGCATCGGATTCGCGCG
TGGGAGAACATTCCGGTCATCAGCTACCTGGCCTTGCGCGGGCGTTGCTCAGCCTGCAAAACCCGCATCAGCCCGCGCTA
CCCGTTGGTGGAGCTAGCCAGCGCGCTGCTGTCGCTGGTGGTGGCCTGGCGCTTTGGTGCTTCGCCCGAGGCCTTGCTGG
CGCTGCCGCTGACCTGGTGCCTGCTGGCCCTGAGCCTGATCGATGCTGAGCACCAGTTGCTGCCGGATGCGCTGGTGCTG
CCGATGCTGTGGCTGGGGTTGATCGTCAACGCCTTCGGCCTCTACGTCCCGCTGACCAGCGCACTGTGGGGCGCGGTGGC
CGGGTACCTCAGCCTGTGGACGGTGTACTGGGTGTTCAAGCTGGTTACCGGCAAGGAAGGCATGGGCTATGGCGACTTCA
AGCTGATGGCGCTGATCGGGGCCTGGGGTGGCTGGCAGGTGTTGCCGTTGACCCTGCTGTTGTCGTCGGTGGTCGGGGCG
CTGGCTGGGCTGTGCCTGTTGCGCTTGCGCCGCCATGCCATTGGCACGGCGATCCCGTTTGGCCCCTATCTGGCGATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCATACACAAACCTGCTTGGATTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.909	95.486	0.524
pilD	Acinetobacter baumannii D1279779	51.786	97.222	0.503
pilD	Acinetobacter nosocomialis M2	51.071	97.222	0.497
pilD	Vibrio campbellii strain DS40M4	50.534	97.569	0.493
pilD	Neisseria gonorrhoeae MS11	51.698	92.014	0.476