Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NZD48_RS07680 Genome accession   NZ_CP103964
Coordinates   1596378..1597259 (-) Length   293 a.a.
NCBI ID   WP_259488691.1    Uniprot ID   -
Organism   Staphylococcus hyicus strain MM2101     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1591378..1602259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NZD48_RS07665 (NZD48_07665) xerC 1591885..1592775 (-) 891 WP_252539522.1 tyrosine recombinase XerC -
  NZD48_RS07670 (NZD48_07670) trmFO 1592897..1594201 (-) 1305 WP_252539525.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NZD48_RS07675 (NZD48_07675) topA 1594214..1596283 (-) 2070 WP_039646065.1 type I DNA topoisomerase -
  NZD48_RS07680 (NZD48_07680) dprA 1596378..1597259 (-) 882 WP_259488691.1 DNA-processing protein DprA Machinery gene
  NZD48_RS07685 (NZD48_07685) sucD 1597805..1598713 (-) 909 WP_039646070.1 succinate--CoA ligase subunit alpha -
  NZD48_RS07690 (NZD48_07690) sucC 1598735..1599901 (-) 1167 WP_037564702.1 ADP-forming succinate--CoA ligase subunit beta -
  NZD48_RS07695 (NZD48_07695) - 1600115..1600384 (-) 270 WP_259488692.1 hypothetical protein -
  NZD48_RS07700 (NZD48_07700) - 1600471..1601247 (-) 777 WP_375162274.1 ribonuclease HII -
  NZD48_RS07705 (NZD48_07705) ylqF 1601237..1602118 (-) 882 WP_259490673.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 33284.63 Da        Isoelectric Point: 9.8592

>NTDB_id=726657 NZD48_RS07680 WP_259488691.1 1596378..1597259(-) (dprA) [Staphylococcus hyicus strain MM2101]
MLLKNLIRLCYAGFTTQQLYRLFKKPLDVLTNDMTQTLHHRITYENHPSLHTKLQKFNSLNATQILYQLRQAHITPITIL
NNQYPRLLKEIYQPPLILFCKGNLSLLNAASYKLAIVGARDFTQYGDEAVHYLLHKMKHASIIVVSGLAKGTDALAHYNA
LKNEMPTIGVLGFGHQYHYPSETKPLRHTLETNQLGLTISEYPPLTPPAKFRFPERNRIISGISHGVLVTEAKERSGALI
TLDQALEQNRNVYVLPGDMFNKHTKGNMMRVKEGAEIVLSAEDILKDMNTSIR

Nucleotide


Download         Length: 882 bp        

>NTDB_id=726657 NZD48_RS07680 WP_259488691.1 1596378..1597259(-) (dprA) [Staphylococcus hyicus strain MM2101]
GTGCTACTAAAAAATTTAATAAGGTTATGTTACGCAGGATTTACGACACAACAACTTTATCGTCTTTTCAAAAAACCATT
GGACGTGTTAACCAATGATATGACACAGACATTGCACCATCGTATTACTTATGAAAATCATCCCTCATTGCATACCAAAC
TCCAAAAATTTAACTCGCTAAATGCAACTCAAATTCTATATCAGTTACGGCAGGCTCACATTACGCCAATCACAATTTTA
AATAATCAATATCCACGTCTCTTAAAAGAAATCTATCAGCCACCCTTAATATTATTTTGCAAAGGTAACCTTTCGCTATT
AAATGCAGCTTCATATAAATTAGCGATAGTAGGTGCACGCGATTTTACGCAATATGGAGATGAAGCTGTACATTATTTGC
TTCACAAGATGAAACATGCTTCTATTATTGTTGTATCAGGGCTTGCTAAAGGTACGGACGCACTTGCACATTACAATGCA
TTGAAAAATGAGATGCCTACTATAGGTGTGTTAGGCTTTGGGCATCAATATCATTATCCTTCTGAAACAAAACCCTTACG
CCATACATTAGAAACGAACCAACTTGGTTTAACCATAAGTGAATATCCTCCTTTGACCCCACCGGCTAAGTTTCGTTTTC
CTGAGCGCAATCGTATTATTAGTGGGATAAGCCATGGGGTTTTAGTGACAGAAGCGAAAGAGCGAAGCGGTGCACTTATT
ACACTAGATCAAGCACTAGAACAAAATAGGAATGTATATGTATTACCTGGAGATATGTTTAATAAGCATACAAAAGGTAA
TATGATGCGTGTTAAAGAAGGGGCTGAAATCGTACTCTCGGCTGAAGATATTTTAAAAGATATGAATACGTCAATTCGGT
GA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

50.175

97.27

0.488
  dprA Staphylococcus aureus N315

50.175

97.27

0.488