Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   P1T45_RS11320 Genome accession   NZ_CP119427
Coordinates   2140952..2142046 (+) Length   364 a.a.
NCBI ID   WP_003105355.1    Uniprot ID   A0ABN0INW8
Organism   Streptococcus parauberis strain KSP45     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2135952..2147046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1T45_RS11295 (P1T45_11300) pgsA 2136064..2136606 (-) 543 WP_003105484.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  P1T45_RS11300 (P1T45_11305) - 2136619..2137596 (-) 978 WP_003103025.1 RodZ family helix-turn-helix domain-containing protein -
  P1T45_RS11305 (P1T45_11310) - 2137646..2138925 (-) 1280 Protein_2179 M16 family metallopeptidase -
  P1T45_RS11310 (P1T45_11315) - 2138925..2140169 (-) 1245 WP_003108846.1 pitrilysin family protein -
  P1T45_RS11315 (P1T45_11320) yaaA 2140546..2140949 (+) 404 Protein_2181 S4 domain-containing protein YaaA -
  P1T45_RS11320 (P1T45_11325) recF 2140952..2142046 (+) 1095 WP_003105355.1 DNA replication/repair protein RecF Machinery gene
  P1T45_RS11325 (P1T45_11330) guaB 2142234..2143715 (-) 1482 WP_003104758.1 IMP dehydrogenase -
  P1T45_RS11330 (P1T45_11335) trpS 2143958..2144980 (-) 1023 WP_003107950.1 tryptophan--tRNA ligase -
  P1T45_RS11335 (P1T45_11340) - 2145376..2146248 (+) 873 WP_003104058.1 YitT family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41839.84 Da        Isoelectric Point: 7.6337

>NTDB_id=726429 P1T45_RS11320 WP_003105355.1 2140952..2142046(+) (recF) [Streptococcus parauberis strain KSP45]
MWLKELTLNHFRNYNDLNINFSEGLNIFIGNNAQGKTNILEAIYFIALTRSHRTRSDKELIQFSTDRLSIEGKLNRLSGN
ISLEINLSDKGRITKINSLKQAKLSEYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSDLSNYNHILKQR
NAYLKAARTIDFDFLVVLDQQLSYYGSRVIQQRIQFIADLEKEADAHHQAISNELESLQIKYISSIDTSQSQLIQEKFME
QLERNRQRDIFRKNTSIGPHRDDIEFYINNMNANFASQGQHRSLILSIKMAEVSLMKILTGDNPILLLDDVMSELDNTRQ
TKLIETVIQENVQTFITTTSLEHLSQLPKTLKTFHVTSGTIKAD

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=726429 P1T45_RS11320 WP_003105355.1 2140952..2142046(+) (recF) [Streptococcus parauberis strain KSP45]
ATGTGGTTAAAGGAATTAACACTAAATCACTTTAGAAATTATAATGACTTAAATATAAATTTTTCAGAGGGACTAAACAT
CTTTATAGGAAACAATGCCCAAGGAAAAACGAACATCTTAGAAGCTATCTATTTTATTGCCTTAACTAGAAGTCATCGCA
CAAGAAGTGATAAAGAATTAATCCAGTTTTCAACTGATCGTTTATCTATTGAAGGAAAATTAAATCGCCTCTCAGGTAAT
ATCAGTTTAGAAATTAATTTATCTGATAAAGGTCGAATAACAAAGATTAATTCATTAAAACAAGCAAAACTTTCTGAATA
TATAGGTACAATGATGGTAGTACTCTTTGCTCCTGAAGATTTACAATTAGTTAAAGGCGCTCCTAGTCTTCGAAGAAAGT
TTATTGATATTGATTTAGGTCAAATTAAACCTGTTTATCTATCTGACTTATCGAATTATAACCATATTTTAAAACAAAGA
AACGCATATTTAAAAGCTGCTAGAACAATTGATTTTGACTTTCTAGTAGTTTTGGATCAACAATTATCATATTATGGTAG
CCGTGTTATTCAGCAAAGAATTCAATTCATAGCTGATCTTGAAAAAGAAGCAGATGCTCATCATCAGGCAATATCAAATG
AACTAGAAAGTTTACAAATTAAATATATTTCTAGCATTGATACAAGTCAAAGTCAACTTATTCAAGAAAAATTCATGGAG
CAACTTGAAAGAAATCGTCAACGTGATATTTTTAGAAAGAATACGAGTATTGGCCCACATAGAGATGACATTGAATTTTA
TATAAATAATATGAATGCAAATTTTGCAAGCCAAGGTCAACATCGAAGCTTAATTTTATCCATAAAGATGGCTGAAGTGA
GTTTAATGAAAATCTTGACTGGAGATAATCCAATACTACTGTTAGATGATGTTATGAGTGAATTAGACAATACAAGACAA
ACAAAATTAATTGAGACTGTCATTCAAGAAAATGTTCAAACTTTTATTACTACTACTAGTTTGGAACACCTCTCGCAACT
TCCAAAAACTTTAAAAACTTTTCATGTAACTAGTGGAACCATTAAGGCAGACTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

61.281

98.626

0.604
  recF Bacillus subtilis subsp. subtilis str. 168

43.935

100

0.448