Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   P1T45_RS10415 Genome accession   NZ_CP119427
Coordinates   1967243..1967692 (-) Length   149 a.a.
NCBI ID   WP_004235125.1    Uniprot ID   A0ABN0IQ85
Organism   Streptococcus parauberis strain KSP45     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1962243..1972692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1T45_RS10400 (P1T45_10405) - 1962448..1963707 (+) 1260 WP_004235131.1 NAD(P)H-dependent oxidoreductase -
  P1T45_RS10405 (P1T45_10410) - 1963757..1965541 (-) 1785 WP_013794470.1 ABC transporter ATP-binding protein -
  P1T45_RS10410 (P1T45_10415) rcrP 1965541..1967250 (-) 1710 WP_308695456.1 ABC transporter ATP-binding protein Regulator
  P1T45_RS10415 (P1T45_10420) rcrR 1967243..1967692 (-) 450 WP_004235125.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  P1T45_RS10420 (P1T45_10425) - 1967899..1968915 (+) 1017 WP_003107779.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  P1T45_RS10425 (P1T45_10430) galU 1968937..1969842 (+) 906 WP_004235122.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  P1T45_RS10430 (P1T45_10435) - 1969865..1970539 (-) 675 WP_003107780.1 rhomboid family intramembrane serine protease -
  P1T45_RS10435 (P1T45_10440) - 1970536..1971063 (-) 528 WP_004235118.1 5-formyltetrahydrofolate cyclo-ligase -
  P1T45_RS10440 (P1T45_10445) - 1971176..1972543 (+) 1368 WP_004235115.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17294.97 Da        Isoelectric Point: 6.9820

>NTDB_id=726421 P1T45_RS10415 WP_004235125.1 1967243..1967692(-) (rcrR) [Streptococcus parauberis strain KSP45]
MSRIIADLRDLTHQIEQITEEIAQAYHIDQLAGPQGHVLVFLERNQDREIFVKDIEKTLNISKSVSSNLVKRMEKNGFIE
VVPSIADKRFKQVVLTEVGKEKIPLLHECRKAIENYFFKEISKDDFMTVKHVIDQLKLNISEYKGEKNA

Nucleotide


Download         Length: 450 bp        

>NTDB_id=726421 P1T45_RS10415 WP_004235125.1 1967243..1967692(-) (rcrR) [Streptococcus parauberis strain KSP45]
ATGTCACGTATTATTGCTGATCTTCGTGATTTGACTCATCAAATTGAACAAATCACTGAAGAAATTGCGCAAGCTTACCA
TATTGACCAGTTAGCTGGGCCTCAAGGCCATGTACTTGTTTTCTTGGAAAGAAATCAGGACCGAGAAATCTTTGTTAAAG
ATATTGAAAAAACATTAAATATCTCAAAATCAGTTTCCAGTAATTTAGTTAAACGCATGGAAAAAAATGGTTTTATTGAA
GTAGTTCCTTCAATAGCAGATAAACGTTTTAAACAAGTAGTATTAACAGAGGTTGGAAAAGAAAAGATTCCTTTGTTGCA
TGAATGCCGGAAGGCTATCGAAAATTATTTTTTCAAGGAAATATCAAAAGATGACTTTATGACAGTCAAGCATGTCATAG
ACCAGCTAAAACTAAATATTTCTGAATACAAAGGAGAGAAAAATGCTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(32-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

42.857

93.96

0.403