Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   P1T45_RS10410 Genome accession   NZ_CP119427
Coordinates   1965541..1967250 (-) Length   569 a.a.
NCBI ID   WP_308695456.1    Uniprot ID   -
Organism   Streptococcus parauberis strain KSP45     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1960541..1972250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1T45_RS10385 (P1T45_10390) - 1960686..1961129 (-) 444 WP_004235137.1 dUTP diphosphatase -
  P1T45_RS10390 (P1T45_10395) - 1961288..1961647 (-) 360 WP_004235135.1 YbaN family protein -
  P1T45_RS10395 (P1T45_10400) - 1961827..1962429 (+) 603 WP_003104239.1 NADPH-dependent FMN reductase -
  P1T45_RS10400 (P1T45_10405) - 1962448..1963707 (+) 1260 WP_004235131.1 NAD(P)H-dependent oxidoreductase -
  P1T45_RS10405 (P1T45_10410) - 1963757..1965541 (-) 1785 WP_013794470.1 ABC transporter ATP-binding protein -
  P1T45_RS10410 (P1T45_10415) rcrP 1965541..1967250 (-) 1710 WP_308695456.1 ABC transporter ATP-binding protein Regulator
  P1T45_RS10415 (P1T45_10420) rcrR 1967243..1967692 (-) 450 WP_004235125.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  P1T45_RS10420 (P1T45_10425) - 1967899..1968915 (+) 1017 WP_003107779.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  P1T45_RS10425 (P1T45_10430) galU 1968937..1969842 (+) 906 WP_004235122.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  P1T45_RS10430 (P1T45_10435) - 1969865..1970539 (-) 675 WP_003107780.1 rhomboid family intramembrane serine protease -
  P1T45_RS10435 (P1T45_10440) - 1970536..1971063 (-) 528 WP_004235118.1 5-formyltetrahydrofolate cyclo-ligase -

Sequence

Protein


Download         Length: 569 a.a.        Molecular weight: 62873.73 Da        Isoelectric Point: 5.6446

>NTDB_id=726420 P1T45_RS10410 WP_308695456.1 1965541..1967250(-) (rcrP) [Streptococcus parauberis strain KSP45]
MLKNAIMRYKWYALGSVLMIIAVVASALLQPHYLKDVLSAVMKNDTDKITEVGQLLLIIAGVGLIAGTVNTILAAKIAQG
VSADIREKVFRKIQSFSYANVEEFNAGNLVVRMTNDVNQIQNLVMMIFQVLLRLPILFIGAFIMAVNTLPKLWWVIILMV
VLIAIIMALVMSQMGPRFGKFQTLMDKINRIAKENLRGVRVVKSFVQEREQYAKFKETSNELLDLNMFIGYGFSMMQPAL
MLVSYLAVFVSLLLVSKMVKTDPTVIGSIASFMTYMMQIMFSIIMVGFMGMQASRAFISIGRLKEVLETELAMTFATEDV
EDLNGDIVFDHVSFSYPNEEDAMLKDISFSIKSGQMVGVVGATGAGKSTLAQLIPRLFDPQEGTITIGGKDLKTLSQQTL
RETVSIVLQKAILFSGTIADNLRQGNLTADLQAMESAARIAQAQEFIDRMDLAYESEVEERGNNFSGGQKQRMSIARGVI
SNPKVLVLDDSTSALDAKSEKLVQEALNKDLKDTTTIIIAQKISSVVKADTILVLDEGKLIGQGTHAELVANNAVYREIY
DTQKGKEED

Nucleotide


Download         Length: 1710 bp        

>NTDB_id=726420 P1T45_RS10410 WP_308695456.1 1965541..1967250(-) (rcrP) [Streptococcus parauberis strain KSP45]
ATGCTTAAAAATGCCATCATGCGTTATAAATGGTATGCCCTAGGTTCTGTCTTAATGATCATAGCAGTTGTAGCAAGTGC
ATTGTTACAACCTCATTATCTGAAAGATGTGCTAAGTGCAGTCATGAAAAATGACACAGATAAAATTACAGAAGTTGGAC
AGTTATTATTGATTATTGCAGGAGTTGGTTTAATTGCCGGTACTGTCAATACCATTTTAGCAGCTAAGATAGCTCAAGGT
GTATCAGCTGATATCCGTGAGAAGGTATTTAGAAAAATCCAAAGTTTTTCATATGCTAATGTTGAGGAATTTAATGCTGG
TAATTTAGTTGTTCGTATGACCAACGATGTTAACCAAATCCAAAACTTGGTGATGATGATTTTCCAAGTCTTGCTCCGTT
TACCGATTTTATTTATAGGTGCCTTTATTATGGCGGTTAACACTTTACCAAAACTATGGTGGGTTATTATCCTGATGGTT
GTATTAATTGCTATTATTATGGCCCTTGTTATGAGTCAAATGGGCCCACGTTTTGGGAAGTTCCAAACCTTGATGGATAA
AATTAATCGTATTGCTAAAGAGAATCTACGTGGTGTTCGTGTCGTTAAATCGTTCGTTCAAGAAAGAGAACAATATGCTA
AATTCAAAGAGACATCAAATGAACTATTAGATCTTAATATGTTTATTGGGTACGGTTTTTCAATGATGCAACCAGCTTTA
ATGCTAGTTTCGTATTTAGCTGTTTTTGTATCACTCTTATTAGTTTCCAAGATGGTAAAAACAGATCCAACAGTTATAGG
TAGTATTGCTTCCTTCATGACTTATATGATGCAAATCATGTTTTCAATTATTATGGTTGGATTCATGGGGATGCAAGCTA
GTCGTGCTTTTATTTCAATTGGTCGTCTGAAAGAAGTTTTAGAGACAGAACTTGCAATGACTTTTGCTACTGAAGACGTT
GAAGATTTAAATGGCGATATTGTTTTTGATCATGTATCTTTCTCATATCCAAATGAAGAAGATGCTATGTTAAAAGATAT
TTCCTTCTCTATTAAATCTGGGCAAATGGTTGGTGTCGTTGGCGCAACAGGTGCCGGAAAATCAACCTTGGCTCAATTAA
TTCCTCGTTTATTTGACCCACAAGAGGGTACAATCACAATTGGTGGTAAAGATTTAAAAACACTCAGCCAACAAACACTC
CGCGAAACAGTTTCAATTGTTTTGCAAAAAGCCATTCTCTTTTCGGGGACTATTGCAGATAACCTTCGCCAAGGAAATTT
AACAGCTGATTTACAAGCTATGGAAAGTGCTGCTAGAATCGCGCAAGCTCAAGAATTTATTGACCGAATGGATTTAGCCT
ACGAAAGTGAAGTTGAAGAACGTGGAAATAATTTCTCTGGTGGTCAGAAACAACGGATGTCCATTGCTCGTGGGGTTATC
AGTAATCCCAAGGTCTTAGTCTTGGACGATTCAACGTCAGCCTTAGATGCTAAGTCAGAGAAACTAGTCCAAGAAGCTTT
AAACAAGGACTTGAAAGATACAACAACAATTATCATTGCACAAAAGATTTCGTCAGTGGTTAAAGCCGATACTATCTTAG
TTTTAGATGAAGGTAAGTTAATTGGTCAAGGAACCCATGCTGAATTAGTAGCAAATAATGCAGTCTACCGTGAAATTTAT
GATACACAGAAAGGTAAGGAGGAAGACTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(16-282)

ABC transporter (ABC_tran)

(344-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

35.017

100

0.366