Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   P1T45_RS09260 Genome accession   NZ_CP119427
Coordinates   1735205..1736239 (-) Length   344 a.a.
NCBI ID   WP_003107548.1    Uniprot ID   A0ABN0IRB3
Organism   Streptococcus parauberis strain KSP45     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1730205..1741239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1T45_RS09225 (P1T45_09230) - 1730995..1731297 (-) 303 WP_003103628.1 YlxQ-related RNA-binding protein -
  P1T45_RS09230 (P1T45_09235) rnpM 1731290..1731568 (-) 279 WP_037620247.1 RNase P modulator RnpM -
  P1T45_RS09235 (P1T45_09240) nusA 1731600..1732754 (-) 1155 WP_003108096.1 transcription termination factor NusA -
  P1T45_RS09240 (P1T45_09245) rimP 1732843..1733325 (-) 483 WP_003107545.1 ribosome maturation factor RimP -
  P1T45_RS09250 (P1T45_09255) trmB 1733719..1734354 (-) 636 WP_003107546.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  P1T45_RS09255 (P1T45_09260) ccrZ 1734354..1735144 (-) 791 Protein_1772 cell cycle regulator CcrZ -
  P1T45_RS09260 (P1T45_09265) pptB 1735205..1736239 (-) 1035 WP_003107548.1 ABC transporter permease Regulator
  P1T45_RS09265 (P1T45_09270) pptA 1736242..1736967 (-) 726 WP_003105648.1 ABC transporter ATP-binding protein Regulator
  P1T45_RS09270 (P1T45_09275) - 1737229..1737648 (+) 420 WP_003108095.1 HIT family protein -
  P1T45_RS09275 (P1T45_09280) - 1737645..1737947 (+) 303 WP_003108094.1 hypothetical protein -
  P1T45_RS09280 (P1T45_09285) - 1737980..1739241 (-) 1262 Protein_1777 LCP family protein -
  P1T45_RS09285 (P1T45_09290) - 1739276..1739800 (-) 525 WP_003107553.1 GNAT family N-acetyltransferase -
  P1T45_RS09290 (P1T45_09295) tsaE 1739787..1740236 (-) 450 WP_003103132.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40045.75 Da        Isoelectric Point: 9.9510

>NTDB_id=726406 P1T45_RS09260 WP_003107548.1 1735205..1736239(-) (pptB) [Streptococcus parauberis strain KSP45]
MEELFKKRKQDFQKLHRKYLPYVLNDHFVLVLVFLLGYVLYQYSQLLRHFPENHWPIIICLILLTFFLLQVGSVATYLEE
ADRQFLLAKENQLITYIDRAGRHSFVSGTVIQSVCLALLFPIFARLGLSLTLFVLMLVLLAGLKWLIQKRKVAALMADSG
LNWDASIVSEKRRKQQILKFYSLFVNVKGVSTSVKERSYLNPLLRTVEKKSGSHWLNLFARAFLRSSDYLGLYIRLTFLA
LLSLIFISNDYLSMALALIFDYLLLFQLLSLYHHFDYHYLSILYPEDSKQKKADLLKLLRGLSLVLLIIEIGFTGNFINA
VIMTIFFGVIAYLYLPYKLKNIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=726406 P1T45_RS09260 WP_003107548.1 1735205..1736239(-) (pptB) [Streptococcus parauberis strain KSP45]
ATGGAAGAATTGTTTAAAAAACGAAAGCAGGACTTTCAAAAACTTCATCGTAAGTACCTCCCCTATGTTCTGAATGATCA
TTTTGTGCTTGTACTAGTCTTTTTATTAGGCTATGTTTTATATCAATATAGCCAACTCTTGCGCCATTTTCCTGAAAATC
ACTGGCCAATTATTATTTGTCTAATTTTATTAACCTTCTTTTTATTACAGGTTGGCTCTGTGGCGACATATTTGGAAGAG
GCTGACCGTCAGTTCTTGCTTGCCAAAGAAAATCAACTGATTACCTATATAGACAGAGCTGGGCGTCACTCATTTGTTAG
TGGAACTGTGATTCAAAGCGTTTGTTTAGCTCTGCTATTCCCCATCTTCGCAAGACTTGGCCTATCGCTGACGCTCTTTG
TTCTCATGTTGGTACTCTTAGCTGGTTTGAAGTGGTTGATCCAGAAAAGGAAAGTAGCTGCGCTGATGGCCGATAGTGGC
TTGAATTGGGATGCTAGTATTGTCAGTGAGAAAAGACGAAAGCAACAAATTCTGAAGTTTTATTCCCTTTTTGTAAATGT
CAAGGGTGTATCCACCAGTGTAAAAGAAAGATCTTACTTAAATCCGCTTTTAAGAACTGTTGAAAAAAAATCAGGCTCAC
ATTGGCTCAATCTCTTTGCGCGTGCTTTTTTGCGAAGCTCAGATTATCTTGGTCTCTATATTAGATTAACCTTTTTAGCA
TTATTATCACTAATATTTATTAGTAATGATTATTTATCAATGGCTTTGGCGTTGATTTTTGACTACCTTTTATTATTTCA
ATTGCTGTCACTATATCATCATTTTGACTATCATTACTTATCAATTTTATATCCGGAAGATAGTAAGCAAAAGAAAGCTG
ATTTACTCAAATTATTACGAGGGCTATCTTTGGTTTTATTGATCATAGAGATTGGATTTACAGGCAATTTCATAAATGCT
GTAATCATGACTATCTTCTTTGGGGTAATAGCCTATCTCTATTTGCCTTATAAGTTAAAGAACATAATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

43.605

100

0.436

  pptB Streptococcus salivarius strain HSISS4

42.151

100

0.422