Detailed information    

insolico Bioinformatically predicted

Overview

Name   chpA   Type   Regulator
Locus tag   PKHYL_RS14175 Genome accession   NZ_AP019516
Coordinates   2647393..2647707 (-) Length   104 a.a.
NCBI ID   WP_332835972.1    Uniprot ID   -
Organism   Psychrobacter sp. KH172YL61     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2642393..2652707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PKHYL_RS14145 minC 2642736..2643562 (+) 827 Protein_2865 septum site-determining protein MinC -
  PKHYL_RS14150 minD 2643977..2644787 (+) 811 Protein_2866 septum site-determining protein MinD -
  PKHYL_RS14155 (PKHYL_34450) - 2644885..2645079 (+) 195 WP_240366544.1 cell division topological specificity factor MinE -
  PKHYL_RS14160 (PKHYL_34460) - 2645224..2645745 (-) 522 WP_071002992.1 cytochrome b -
  PKHYL_RS14165 (PKHYL_34470) - 2645887..2646258 (-) 372 WP_240365433.1 hypothetical protein -
  PKHYL_RS14170 (PKHYL_34480) - 2646444..2647403 (-) 960 WP_240365434.1 chemotaxis protein CheB -
  PKHYL_RS14175 (PKHYL_34490) chpA 2647393..2647707 (-) 315 WP_332835972.1 response regulator Regulator
  PKHYL_RS14180 (PKHYL_34500) - 2647638..2649857 (-) 2220 WP_240365435.1 chemotaxis protein CheA -
  PKHYL_RS14185 (PKHYL_34510) - 2649957..2650472 (-) 516 WP_240365436.1 Hpt domain-containing protein -
  PKHYL_RS14190 (PKHYL_34520) - 2650610..2651173 (-) 564 WP_332835973.1 hypothetical protein -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 11832.61 Da        Isoelectric Point: 4.4798

>NTDB_id=72640 PKHYL_RS14175 WP_332835972.1 2647393..2647707(-) (chpA) [Psychrobacter sp. KH172YL61]
MQCGGCKDGIDAIEILQDTTPDMILLDIEMPRMDGFEVATQVRFNSRLQHIPIIMITSRTGEKHRERALEIGVNDYMGKP
FQEKELLEKIQRLLGEEVSLTNDG

Nucleotide


Download         Length: 315 bp        

>NTDB_id=72640 PKHYL_RS14175 WP_332835972.1 2647393..2647707(-) (chpA) [Psychrobacter sp. KH172YL61]
ATTCAATGTGGCGGTTGCAAAGATGGCATCGATGCAATCGAGATACTACAAGATACAACACCAGATATGATCTTGTTAGA
TATCGAAATGCCGCGTATGGATGGATTCGAGGTGGCGACTCAGGTCAGATTCAATAGTCGATTACAGCATATCCCAATTA
TTATGATTACCTCACGTACTGGAGAAAAACATCGTGAGCGTGCTCTAGAGATTGGGGTGAACGACTATATGGGTAAACCA
TTCCAAGAAAAAGAGCTTCTTGAAAAAATTCAAAGACTACTAGGTGAAGAGGTTAGCCTAACTAATGACGGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

68.539

85.577

0.587
  pilL-C Synechocystis sp. PCC 6803

45.833

92.308

0.423

Multiple sequence alignment