Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   P1T45_RS07050 Genome accession   NZ_CP119427
Coordinates   1293597..1295378 (-) Length   593 a.a.
NCBI ID   WP_003108299.1    Uniprot ID   A0ABN0IS04
Organism   Streptococcus parauberis strain KSP45     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1288597..1300378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1T45_RS07030 (P1T45_07035) rpiA 1288860..1289567 (-) 708 WP_307969263.1 ribose-5-phosphate isomerase RpiA -
  P1T45_RS07035 (P1T45_07040) mnmE 1289889..1291265 (+) 1377 WP_037619617.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE -
  P1T45_RS07040 (P1T45_07045) pepV 1291377..1292780 (-) 1404 WP_003108300.1 dipeptidase PepV -
  P1T45_RS07045 (P1T45_07050) - 1292901..1293502 (-) 602 Protein_1341 nitroreductase family protein -
  P1T45_RS07050 (P1T45_07055) uvrC 1293597..1295378 (-) 1782 WP_003108299.1 excinuclease ABC subunit UvrC Machinery gene
  P1T45_RS07055 (P1T45_07060) - 1295569..1296735 (-) 1167 WP_003108298.1 sugar MFS transporter -
  P1T45_RS07060 (P1T45_07065) - 1296742..1297545 (-) 804 WP_003108297.1 Cof-type HAD-IIB family hydrolase -
  P1T45_RS07065 (P1T45_07070) - 1297610..1298986 (-) 1377 WP_308695351.1 NAD-dependent succinate-semialdehyde dehydrogenase -
  P1T45_RS07070 (P1T45_07075) - 1299075..1299763 (-) 689 Protein_1346 YjjG family noncanonical pyrimidine nucleotidase -

Sequence

Protein


Download         Length: 593 a.a.        Molecular weight: 68311.68 Da        Isoelectric Point: 9.3912

>NTDB_id=726386 P1T45_RS07050 WP_003108299.1 1293597..1295378(-) (uvrC) [Streptococcus parauberis strain KSP45]
MNDLIKHKLELLPDSPGCYLHKNKDGKIIYVGKAKNLKNRVRSYFRGSHDTKTELLVSEIADFEFIVTGSNTEALLLEIN
LIQENMPRYNIKLKDDKSYPFIKITNEHFPRLLITRQIRKNDGLYFGPYPDSYTANEVKKLLDRIFPFKKCTNPVNKVCF
YYHIGQCNAHTICQTDKAYWDGLVEDVKLFLNGKDDKIIDGLKRKMKSASEELEFERAAEYRDLISGIATLRTKQRVMSK
DLMDRDIFGYYVEKGWMCVQVFFVRQGKLIQRDVNMFPYYNEEEDDFLTYMGQFYQDKRHFLPKEVFIPANIDHELVEAI
VPSKIIKPQRGEKKQLVALATKNARVSLQQKFDLLEKDLKKTKGAIDNLGELMAIPTPIRIEAFDNSNIQGTSPVAAMVV
FVDGKPSKKDYRKFKIKTVTGPDDYASMREVISRRYSRVQKDNLQAPDLIIIDGGQGQVNIAKDVIQNQLGLSIPVAGLQ
KNDKHQTQELLFGDPLEVIDLPRNSEEFFLLHRIQDEVHRFAITFHRQVRSKNSFSSKLDNIEGLGPKRKQTLLKHFKNM
TAIGNATVDEIRALGIPEKVAENLLASFNQKND

Nucleotide


Download         Length: 1782 bp        

>NTDB_id=726386 P1T45_RS07050 WP_003108299.1 1293597..1295378(-) (uvrC) [Streptococcus parauberis strain KSP45]
ATGAATGATCTGATTAAACATAAGCTGGAATTGCTTCCTGATAGTCCAGGATGTTATCTCCACAAAAATAAAGACGGCAA
AATAATCTATGTTGGAAAAGCTAAAAATTTAAAGAATCGGGTTCGCTCTTATTTTAGAGGAAGTCATGATACCAAGACTG
AATTATTGGTTTCAGAAATTGCTGATTTTGAATTCATTGTAACGGGCTCAAATACAGAAGCTCTTCTTTTAGAAATTAAC
TTGATACAAGAGAACATGCCTCGATATAACATCAAGTTAAAGGATGACAAGTCTTATCCGTTTATCAAGATTACTAATGA
GCATTTCCCGCGTCTATTGATTACTCGCCAAATTCGTAAGAATGATGGGCTCTATTTTGGCCCTTATCCTGATTCTTATA
CAGCAAATGAAGTCAAAAAGCTTTTGGACCGAATTTTCCCTTTTAAGAAATGTACTAACCCTGTAAACAAAGTTTGCTTT
TATTATCACATCGGCCAGTGTAATGCCCATACCATTTGTCAAACTGATAAAGCTTACTGGGATGGCCTGGTGGAAGACGT
CAAACTGTTCTTGAATGGTAAAGACGACAAAATCATTGATGGTCTAAAAAGAAAGATGAAGTCAGCTTCCGAGGAATTGG
AGTTTGAACGAGCTGCTGAGTATCGTGATTTGATTTCGGGAATTGCTACGCTGAGAACCAAACAACGAGTGATGAGTAAA
GACTTAATGGACAGAGACATTTTTGGCTATTACGTCGAAAAAGGCTGGATGTGCGTTCAAGTTTTCTTTGTTAGACAGGG
GAAATTAATCCAAAGAGATGTTAATATGTTCCCCTACTATAACGAGGAAGAAGATGATTTCTTAACTTATATGGGGCAAT
TTTACCAAGATAAAAGACATTTCCTACCCAAGGAAGTCTTCATTCCTGCTAACATTGACCACGAACTGGTAGAAGCTATT
GTCCCAAGTAAGATAATTAAACCACAACGTGGTGAGAAGAAGCAGCTAGTCGCCTTAGCAACCAAGAATGCACGTGTCTC
CCTTCAACAAAAATTTGATTTGCTGGAAAAAGATTTGAAAAAGACAAAAGGGGCTATTGATAATCTAGGTGAGTTAATGG
CTATTCCAACACCTATTCGAATTGAAGCATTTGATAACTCGAATATTCAAGGAACAAGTCCAGTCGCCGCTATGGTCGTC
TTTGTCGATGGAAAACCAAGTAAAAAAGATTATCGAAAATTCAAAATCAAAACAGTCACTGGACCAGATGACTATGCCAG
TATGCGGGAAGTTATCTCCAGACGTTATAGTCGGGTTCAAAAGGACAACTTACAAGCTCCAGATTTAATCATCATTGATG
GAGGACAAGGGCAAGTTAATATCGCTAAGGATGTCATTCAAAATCAACTCGGCTTATCTATTCCAGTTGCTGGTTTGCAA
AAAAATGACAAGCACCAAACCCAAGAACTCTTGTTTGGTGACCCCTTGGAAGTGATTGATTTACCCCGCAATTCAGAGGA
ATTTTTCTTGCTTCATCGCATTCAAGATGAGGTTCATCGCTTTGCTATTACCTTCCATAGACAGGTTCGCAGTAAGAATT
CTTTCTCCTCAAAATTGGACAATATTGAGGGGCTTGGTCCTAAGCGCAAGCAAACCTTGCTCAAACATTTTAAGAATATG
ACAGCTATTGGTAATGCCACTGTAGATGAGATAAGGGCCTTGGGGATTCCAGAAAAAGTTGCCGAAAATTTACTAGCTAG
TTTTAATCAAAAAAATGACTAA

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(375-523)

UvrB/uvrC motif (UVR)

(196-228)

GIY-YIG catalytic domain (GIY-YIG)

(17-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

74.874

100

0.749
  uvrC Streptococcus pneumoniae R6

74.536

100

0.745
  uvrC Streptococcus pneumoniae D39

74.536

100

0.745