Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   M2494_RS15720 Genome accession   NZ_AP019411
Coordinates   3551908..3553248 (+) Length   446 a.a.
NCBI ID   WP_003381273.1    Uniprot ID   -
Organism   Pseudomonas syringae pv. actinidiae strain MAFF613020     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3546908..3558248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2494_RS15695 (KPSA1B_103206) pgeF 3547092..3547820 (-) 729 WP_003381265.1 peptidoglycan editing factor PgeF -
  M2494_RS15700 (KPSA1B_103207) rluD 3547817..3548779 (-) 963 WP_003381266.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  M2494_RS15705 (KPSA1B_103208) - 3548929..3549951 (+) 1023 WP_003381267.1 outer membrane protein assembly factor BamD -
  M2494_RS15710 (KPSA1B_103209) - 3550081..3550320 (+) 240 WP_057403016.1 PP0621 family protein -
  M2494_RS15715 (KPSA1B_103210) pilS 3550310..3551905 (+) 1596 WP_003381271.1 ATP-binding protein Regulator
  M2494_RS15720 (KPSA1B_103211) pilR 3551908..3553248 (+) 1341 WP_003381273.1 sigma-54 dependent transcriptional regulator Regulator
  M2494_RS15725 (KPSA1B_103212) - 3553709..3554326 (+) 618 WP_003381275.1 TetR/AcrR family transcriptional regulator -
  M2494_RS15730 (KPSA1B_103213) - 3554408..3555523 (+) 1116 WP_017683545.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49951.07 Da        Isoelectric Point: 6.8233

>NTDB_id=72623 M2494_RS15720 WP_003381273.1 3551908..3553248(+) (pilR) [Pseudomonas syringae pv. actinidiae strain MAFF613020]
MSPRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNLDTAIHALKAGAFDFVTKPVDLNRLRELVNSALSLPCATQPVRSIDSRLLGDSPPMRTLRNQIGKLARSQAPI
YISGESGSGKELVARLIHEQGPRINKPFVPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHNGTLFLDEVADL
PLAMQVKLLRAIQEKSIRSVGGQQEQVVDVRILCATHKDLNVEVAAGRFRQDLYYRLNVIELRVPSLRERREDIDQIAAS
VLRRLAGNGAQPVARLHAQALETLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLAESASPQAQQGANLADIDNLE
DYLESIERKLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=72623 M2494_RS15720 WP_003381273.1 3551908..3553248(+) (pilR) [Pseudomonas syringae pv. actinidiae strain MAFF613020]
ATGAGCCCACGGCAAAAGATCCTGATAGTCGATGATGAGCCGGATATTCGCGAGCTTCTGGAGATCACCCTCGGGCGCAT
GAAGCTCGACACCCGCAGCGCTCGCAACGTTGCCGAGGCCCATGACTGGCTGGCCCGCGAGCCGTTCGATATGTGCCTGA
CCGACATGCGCCTGCCCGATGGCAACGGCCTGGAACTGGTGCAGCACATCCAGCACGGCTACCCCCATGTGCCGGTGGCG
ATGATCACCGCCCACGGCAATCTGGACACGGCGATTCATGCGTTGAAAGCCGGAGCCTTCGACTTTGTGACCAAACCGGT
AGACCTCAACCGGCTCCGCGAACTGGTCAATAGTGCGCTGAGCCTGCCCTGCGCCACCCAACCGGTACGCAGCATCGACA
GCCGGCTGCTGGGCGACTCACCGCCGATGCGTACCTTGCGTAACCAGATCGGCAAGCTGGCGCGCAGCCAGGCGCCCATT
TACATCAGCGGCGAGTCGGGCAGCGGCAAAGAGCTGGTAGCCCGGCTGATCCACGAGCAAGGGCCGCGCATCAACAAACC
CTTCGTGCCGGTCAACTGCGGGGCGATTCCATCCGAATTGATGGAGAGCGAATTCTTCGGCCATCGCAAAGGCAGCTTCA
GCGGTGCCCACGAAGACAAGCCGGGCCTATTCCAGGCGGCACACAACGGGACACTGTTCCTTGATGAGGTCGCCGATCTG
CCGCTGGCCATGCAGGTAAAACTGCTGCGCGCGATCCAGGAGAAGTCCATCCGCAGCGTCGGCGGTCAGCAGGAGCAGGT
CGTGGACGTGCGTATTCTGTGCGCCACCCACAAGGACCTGAATGTCGAAGTCGCTGCGGGCCGTTTCCGTCAGGACCTGT
ATTACCGGCTTAACGTGATCGAACTGCGTGTGCCTTCATTGCGCGAGCGGCGTGAAGATATCGATCAGATTGCAGCCAGC
GTTTTGCGACGGCTTGCCGGCAACGGCGCTCAGCCCGTCGCGCGCTTGCATGCGCAGGCTCTGGAAACACTGAAAAGTTA
TCGATTCCCTGGGAACGTGCGCGAACTGGAAAACATGCTGGAGCGCGCTTACACCCTCTGTGAAAACGATGAAATCCACG
CCAGCGACCTGCGCCTCGCCGAGTCCGCCAGCCCCCAGGCACAACAGGGTGCGAACCTGGCTGATATCGATAACCTGGAA
GACTACCTGGAAAGCATCGAACGCAAACTCATCCTCCAGGCCCTGGAAGAAACCCGCTGGAACCGCACCGCCGCGGCCGA
GCGGCTCAGTTTGTCATTCAGATCGTTGCGCTATCGGTTGAAGAAGCTGGGGCTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-116)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Sigma-54 interaction domain (Sigma54_activat)

(137-302)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

78.104

99.327

0.776
  pilR Acinetobacter baumannii strain A118

48.478

100

0.5

Multiple sequence alignment