Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   NYF25_RS07965 Genome accession   NZ_CP103850
Coordinates   1645496..1646182 (-) Length   228 a.a.
NCBI ID   WP_001792568.1    Uniprot ID   A0A133PXY3
Organism   Staphylococcus aureus strain NRL 02/947     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1640496..1651182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYF25_RS07945 (NYF25_07945) rpsT 1641410..1641661 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  NYF25_RS07950 (NYF25_07950) holA 1641706..1642680 (-) 975 WP_001282562.1 DNA polymerase III subunit delta -
  NYF25_RS07955 (NYF25_07955) comEC 1642737..1644938 (-) 2202 WP_001566051.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NYF25_RS07960 (NYF25_07960) - 1644943..1645404 (-) 462 WP_000439693.1 ComE operon protein 2 -
  NYF25_RS07965 (NYF25_07965) comEA 1645496..1646182 (-) 687 WP_001792568.1 ComEA family DNA-binding protein Machinery gene
  NYF25_RS07970 (NYF25_07970) - 1646222..1646938 (-) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  NYF25_RS07975 (NYF25_07975) rsfS 1646941..1647294 (-) 354 WP_001088022.1 ribosome silencing factor -
  NYF25_RS07980 (NYF25_07980) yqeK 1647295..1647879 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  NYF25_RS07985 (NYF25_07985) nadD 1647869..1648438 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  NYF25_RS07990 (NYF25_07990) yhbY 1648441..1648731 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  NYF25_RS07995 (NYF25_07995) aroE 1648735..1649541 (-) 807 WP_000666761.1 shikimate dehydrogenase -
  NYF25_RS08000 (NYF25_08000) yqeH 1649555..1650655 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25863.49 Da        Isoelectric Point: 9.3305

>NTDB_id=725989 NYF25_RS07965 WP_001792568.1 1645496..1646182(-) (comEA) [Staphylococcus aureus strain NRL 02/947]
MVLLYQFLLRYKDFLTQWKLYILSAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHEKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=725989 NYF25_RS07965 WP_001792568.1 1645496..1646182(-) (comEA) [Staphylococcus aureus strain NRL 02/947]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGAAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A133PXY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.238

99.561

0.978
  comEA Staphylococcus aureus N315

97.357

99.561

0.969