Detailed information NTG0725902

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: NYR99_RS17065
• Genome accession: NZ_CP103840
• Coordinates: 3911342..3912736 (+)
• Length: 464 a.a.
• NCBI ID: WP_316692646.1
• Uniprot ID: -
• Organism: Xanthomonas dyei strain 22-325
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3906342..3917736

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NYR99_RS17045 (NYR99_17010)	sucD	3906926..3907801 (-)	876	WP_011038208.1	succinate--CoA ligase subunit alpha	-
NYR99_RS17050 (NYR99_17015)	sucC	3907826..3908995 (-)	1170	WP_316687910.1	ADP-forming succinate--CoA ligase subunit beta	-
NYR99_RS17055 (NYR99_17020)	-	3909228..3910844 (+)	1617	WP_228325307.1	ATP-binding protein	-
NYR99_RS17065 (NYR99_17030)	pilR	3911342..3912736 (+)	1395	WP_316692646.1	sigma-54 dependent transcriptional regulator	Regulator
NYR99_RS17070 (NYR99_17035)	pilB	3913055..3914788 (-)	1734	WP_316687911.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NYR99_RS17075 (NYR99_17040)	-	3914943..3915794 (+)	852	WP_316687912.1	glycosyltransferase family 2 protein	-
NYR99_RS17080 (NYR99_17045)	-	3915846..3916706 (+)	861	WP_316687913.1	glycosyltransferase family 2 protein	-

Sequence

Protein

• Length: 464 a.a.
• Molecular weight: 50160.58 Da
• Isoelectric Point: 6.5837

>NTDB_id=725902 NYR99_RS17065 WP_316692646.1 3911342..3912736(+) (pilR) [Xanthomonas dyei strain 22-325]
MSEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPAPPPEQASRLLGDSTAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALNTYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAATPGSAA
VEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1395 bp

>NTDB_id=725902 NYR99_RS17065 WP_316692646.1 3911342..3912736(+) (pilR) [Xanthomonas dyei strain 22-325]
ATGAGCGAACCCAAAAGTGCCCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAGCAACCCCTACGACCTGTGCCTGA
CCGACATGCGGCTGCCCGACGGCAACGGCATCGAACTGGTTACCGAAATCGCAAAGCACTATCCGCAAACGCCGGTCGCC
ATGATCACCGCGTTCGGCAGCATGGATCTGGCGGTGGAGGCCTTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGTGTGCTGCGCGGCCTGGTAAAGCACGCGCTGGAACTGAACAACCGCGACCGCCCTGCACCGCCCGCGCCGC
CGCCCGAACAAGCCAGCCGTCTGCTCGGCGATTCGACCGCAATGGAGAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTGTATATCGTCGGCGAATCCGGCGTGGGCAAGGAGCTGGTGGCACGCACCATCCACGAGCAAGGCGC
CCGCGCCGCCGGCCCGTTCGTGCCGGTGAACTGCGGCGCCATCCCCGCCGAACTGATGGAAAGCGAGTTCTTCGGCCACA
AAAAGGGCAGCTTCACCGGGGCGCATGCCGACAAACCCGGCCTGTTCCAGGCCGCGCACGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAATTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
CTCCGGCGAAACGCTGGTGGACGTGCGCATCCTCTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TCCGGCATGACCTTTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATCGCGCGCCTGGCGCGCAGCCACGGCCGGCCGATTCCACTGCTGACCCAATCAGCCCTGGA
CGCGCTGAATACTTACGGCTTTCCGGGCAACGTCCGCGAGCTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTACCCGCTCACGGCGGCCACCGCCTAGCCGCGACGCCCGGCAGCGCAGCG
GTCGAACCGCGCGAAGCCGTGGTGGATATCGACCCCGCGTCGTCCGCCCTGCCCTCCTACATCGAGCAGCTCGAGCGCGC
CGCGATCCAGAAGGCACTGGAAGAAAACCGCTGGAACAAGACCAAAACCGCCGCGCAGCTGGGCATTACCTTTCGGGCGC
TGCGTTACAAGCTCAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

• Response regulator receiver domain (Response_reg) (8-115)

• Bacterial regulatory protein, Fis family (HTH_8) (421-461)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.478	99.138	0.629
pilR	Acinetobacter baumannii strain A118	48.707	100	0.487