Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   NYR89_RS00400 Genome accession   NZ_CP103833
Coordinates   78645..79193 (+) Length   182 a.a.
NCBI ID   WP_279445872.1    Uniprot ID   -
Organism   Actinobacillus arthritidis strain CCUG24862     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 73645..84193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR89_RS00395 (NYR89_00395) - 77410..78591 (+) 1182 WP_279445871.1 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -
  NYR89_RS00400 (NYR89_00400) pilF 78645..79193 (+) 549 WP_279445872.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  NYR89_RS00405 (NYR89_00405) - 79269..81608 (+) 2340 WP_279445873.1 Tex family protein -
  NYR89_RS00410 (NYR89_00410) - 82274..82561 (+) 288 WP_279445874.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  NYR89_RS00415 (NYR89_00415) - 82561..82983 (+) 423 WP_279445875.1 type II toxin-antitoxin system VapC family toxin -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20655.35 Da        Isoelectric Point: 7.0271

>NTDB_id=725793 NYR89_RS00400 WP_279445872.1 78645..79193(+) (pilF) [Actinobacillus arthritidis strain CCUG24862]
MNLAKFLRNLTACMLLSVLFGCSSHFPTSQTTFNRSEAVKARINLALAYLDQHDLPKAKENIDKALSHDQNDYLPHSVLA
YYYQQIGDQAHAEQAYQQALKLSDNRPDVLNNYGTFLCKQAKFSQAYQQFEQAVQSELPYYHQADSLENIVLCAKQEPNL
AKVNEALSQLEKLDKARAAVLR

Nucleotide


Download         Length: 549 bp        

>NTDB_id=725793 NYR89_RS00400 WP_279445872.1 78645..79193(+) (pilF) [Actinobacillus arthritidis strain CCUG24862]
ATGAACCTTGCAAAATTTTTGCGAAATTTGACCGCTTGTATGCTGTTATCTGTGCTGTTCGGTTGTTCTTCTCATTTTCC
AACCTCTCAAACCACTTTTAATCGTTCGGAAGCGGTTAAAGCACGTATCAATTTAGCCTTAGCGTATCTCGATCAACATG
ATTTACCCAAAGCGAAAGAGAATATTGATAAAGCGCTAAGCCACGATCAAAACGATTACTTACCTCATTCTGTTTTAGCT
TATTACTATCAGCAAATCGGTGATCAAGCTCACGCCGAGCAAGCTTATCAGCAAGCATTGAAATTAAGTGATAATCGTCC
GGATGTCTTAAATAATTACGGCACGTTTTTGTGTAAACAAGCTAAGTTCAGTCAGGCGTACCAACAATTTGAACAAGCGG
TGCAAAGCGAGCTACCTTACTATCATCAAGCCGATAGCCTCGAAAATATTGTGTTATGTGCCAAACAAGAGCCGAATTTA
GCTAAAGTAAACGAAGCGTTAAGCCAATTAGAAAAGCTGGATAAAGCAAGAGCGGCGGTACTGCGCTAG

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_8)

(79-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Glaesserella parasuis strain SC1401

65.426

100

0.676
  pilF/pilF2 Haemophilus influenzae Rd KW20

46.199

93.956

0.434