Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   NYR79_RS10450 Genome accession   NZ_CP103824
Coordinates   2277666..2278214 (-) Length   182 a.a.
NCBI ID   WP_279454946.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 3524     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2272666..2283214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR79_RS10435 (NYR79_10435) - 2273148..2273666 (+) 519 WP_179130574.1 SprT family zinc-dependent metalloprotease -
  NYR79_RS10440 (NYR79_10440) - 2273778..2275058 (+) 1281 WP_279455525.1 NAD(P)/FAD-dependent oxidoreductase -
  NYR79_RS10445 (NYR79_10445) - 2275251..2277590 (-) 2340 WP_279454945.1 Tex family protein -
  NYR79_RS10450 (NYR79_10450) pilF 2277666..2278214 (-) 549 WP_279454946.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  NYR79_RS10455 (NYR79_10455) - 2278269..2279450 (-) 1182 WP_279454947.1 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -
  NYR79_RS10485 (NYR79_10485) gltX 2280486..2281925 (+) 1440 WP_279438613.1 glutamate--tRNA ligase -
  NYR79_RS10495 (NYR79_10495) - 2282188..2282355 (-) 168 WP_039195964.1 Trm112 family protein -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20714.38 Da        Isoelectric Point: 6.9482

>NTDB_id=725607 NYR79_RS10450 WP_279454946.1 2277666..2278214(-) (pilF) [Actinobacillus equuli subsp. haemolyticus strain 3524]
MNLAKFLRNLTACMLLSVLFGCSSQIPTSQTTFNRSEAVKARINLALAYLEQHDLPKAKENIDKALSHDQNDYLPHSVLA
YYYQQIGDQAHAERAYQQALKLSDNRPDVLNNYGTFLCKQAKFDQAYQQFEQAVQSEQSYYHQADSLENIVLCAKQEPNL
VKVNEALNQLEKLDKARAAALR

Nucleotide


Download         Length: 549 bp        

>NTDB_id=725607 NYR79_RS10450 WP_279454946.1 2277666..2278214(-) (pilF) [Actinobacillus equuli subsp. haemolyticus strain 3524]
ATGAACCTTGCAAAATTTTTGCGAAATTTGACCGCTTGTATGCTGTTATCTGTGCTGTTCGGTTGTTCTTCTCAGATTCC
TACCTCTCAAACCACTTTTAATCGCTCGGAAGCGGTTAAAGCCCGTATCAATTTAGCCTTAGCGTATCTCGAGCAACATG
ATTTACCCAAAGCGAAAGAGAATATTGATAAAGCGCTAAGCCACGATCAAAACGATTACTTACCTCATTCTGTTTTAGCT
TATTACTATCAGCAAATCGGTGATCAAGCTCACGCCGAGCGAGCTTATCAGCAAGCATTGAAATTAAGTGATAATCGTCC
GGATGTCTTAAATAATTACGGTACTTTTCTGTGTAAACAAGCCAAGTTTGATCAGGCATATCAACAGTTTGAGCAAGCGG
TGCAAAGCGAGCAGTCTTACTATCATCAAGCCGATAGCCTCGAAAATATCGTGTTGTGTGCCAAACAAGAGCCGAATTTG
GTTAAAGTAAACGAAGCGTTAAACCAATTAGAAAAGCTGGATAAAGCAAGAGCAGCGGCACTGCGTTAG

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_8)

(79-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Glaesserella parasuis strain SC1401

66.489

100

0.687
  pilF/pilF2 Haemophilus influenzae Rd KW20

47.368

93.956

0.445