Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   NYR77_RS09330 Genome accession   NZ_CP103822
Coordinates   2022148..2022510 (+) Length   120 a.a.
NCBI ID   WP_279440679.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 3617     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2017148..2027510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR77_RS09305 (NYR77_09300) rpsL 2017261..2017635 (-) 375 WP_005543325.1 30S ribosomal protein S12 -
  NYR77_RS09310 (NYR77_09305) rfaC 2017759..2018718 (-) 960 WP_279440676.1 lipopolysaccharide heptosyltransferase RfaC -
  NYR77_RS09315 (NYR77_09310) waaF 2018794..2019831 (-) 1038 WP_279440677.1 lipopolysaccharide heptosyltransferase II -
  NYR77_RS09320 (NYR77_09315) - 2019914..2020369 (-) 456 WP_275218342.1 MliC family protein -
  NYR77_RS09325 (NYR77_09320) - 2020443..2021819 (-) 1377 WP_279440678.1 LysM-like peptidoglycan-binding domain-containing protein -
  NYR77_RS09330 (NYR77_09325) comEA/comE1 2022148..2022510 (+) 363 WP_279440679.1 ComEA family DNA-binding protein Machinery gene
  NYR77_RS09335 (NYR77_09330) asd 2022686..2023579 (+) 894 WP_279440680.1 archaetidylserine decarboxylase -
  NYR77_RS09340 (NYR77_09335) gshAB 2023731..2026004 (+) 2274 WP_279440681.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -
  NYR77_RS09345 (NYR77_09340) - 2026096..2026716 (-) 621 WP_015674354.1 MerR family transcriptional regulator -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 12796.61 Da        Isoelectric Point: 10.0523

>NTDB_id=725576 NYR77_RS09330 WP_279440679.1 2022148..2022510(+) (comEA/comE1) [Actinobacillus equuli subsp. haemolyticus strain 3617]
MKTRSKFGLSLLIGMLSTGTFAAEKVKPTDTEPTPVTQNVQAVTGHNHAEIMTNANLVNINTATAAEIQDKLVGIGAKKA
QAIVEYRTKNGAFSSLEQLTDVSGIGKATLDKNRDRIALQ

Nucleotide


Download         Length: 363 bp        

>NTDB_id=725576 NYR77_RS09330 WP_279440679.1 2022148..2022510(+) (comEA/comE1) [Actinobacillus equuli subsp. haemolyticus strain 3617]
ATGAAAACACGTTCAAAATTTGGCCTAAGTTTATTAATCGGTATGTTATCTACCGGTACGTTTGCAGCTGAAAAAGTAAA
GCCTACCGATACAGAACCTACTCCTGTGACTCAAAATGTACAAGCAGTCACAGGGCATAACCATGCCGAAATAATGACCA
ATGCAAACTTAGTGAACATTAACACAGCGACCGCCGCTGAAATCCAAGATAAATTGGTTGGTATTGGCGCTAAAAAAGCA
CAAGCGATAGTTGAATATCGTACGAAAAATGGCGCGTTTAGCAGTTTGGAACAACTTACCGATGTATCTGGCATAGGTAA
AGCTACGCTTGATAAAAATCGTGATCGCATTGCATTACAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(54-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

63.333

100

0.633
  comEA Vibrio campbellii strain DS40M4

40.351

95

0.383