Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NYR76_RS05015 Genome accession   NZ_CP103821
Coordinates   1119490..1120869 (+) Length   459 a.a.
NCBI ID   WP_279443725.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. equuli strain 3750     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1114490..1125869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR76_RS04985 (NYR76_04985) yacG 1114776..1114964 (-) 189 WP_005623139.1 DNA gyrase inhibitor YacG -
  NYR76_RS04990 (NYR76_04990) coaE 1114946..1115584 (-) 639 WP_279443720.1 dephospho-CoA kinase -
  NYR76_RS04995 (NYR76_04995) - 1115606..1116280 (-) 675 WP_279443721.1 prepilin peptidase -
  NYR76_RS05000 (NYR76_05000) pilC 1116280..1117473 (-) 1194 WP_279443722.1 type II secretion system F family protein Machinery gene
  NYR76_RS05005 (NYR76_05005) pilB 1117466..1118851 (-) 1386 WP_279443723.1 GspE/PulE family protein Machinery gene
  NYR76_RS05010 (NYR76_05010) pilA 1118872..1119309 (-) 438 WP_279443724.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  NYR76_RS05015 (NYR76_05015) radA 1119490..1120869 (+) 1380 WP_279443725.1 DNA repair protein RadA Machinery gene
  NYR76_RS05020 (NYR76_05020) pepB 1120935..1122221 (+) 1287 WP_279443781.1 aminopeptidase PepB -
  NYR76_RS05025 (NYR76_05025) - 1122349..1123284 (+) 936 WP_279443726.1 KpsF/GutQ family sugar-phosphate isomerase -
  NYR76_RS05030 (NYR76_05030) greB 1123294..1123782 (+) 489 WP_005611555.1 transcription elongation factor GreB -
  NYR76_RS05035 (NYR76_05035) ribE 1123870..1124331 (-) 462 WP_005600491.1 6,7-dimethyl-8-ribityllumazine synthase -
  NYR76_RS05040 (NYR76_05040) - 1124442..1125647 (-) 1206 WP_279443727.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49712.40 Da        Isoelectric Point: 7.9500

>NTDB_id=725543 NYR76_RS05015 WP_279443725.1 1119490..1120869(+) (radA) [Actinobacillus equuli subsp. equuli strain 3750]
MAKAPKTAYVCNDCGAEYSRWMGQCKECKAWNTISEVRLISSKESSKNDRFSGYAGETSGKVQTLSEISLQEVPRFSSGF
NELDRVLGGGVVPGSAILIGGHPGAGKSTLLLQVMCGLSKMLPTLYVTGEESLQQVAMRANRLGLPTDNLKMLSETSVEH
ICNIADQEKPKLMVIDSIQVMHLSDIQSSPGSVAQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDASL
LLEGESDSRFRTLRSQKNRFGAVNELGVFAMTEQGLREVKNPSAIFLSRSDELVSGSSVMVLWEGTRPLLVEIQALVDHS
MLANPRRVAVGLDHNRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALILALISSFRNRPLPQDLVIFGEVG
LAGEIRPVPSGQERISEAAKHGFKRAIVPFSNMPKKPIKDMEVIGVKKLSDALDALGNL

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=725543 NYR76_RS05015 WP_279443725.1 1119490..1120869(+) (radA) [Actinobacillus equuli subsp. equuli strain 3750]
ATGGCAAAAGCACCGAAAACGGCTTACGTATGTAATGATTGCGGCGCAGAATATTCTCGCTGGATGGGACAATGCAAAGA
GTGCAAAGCATGGAATACGATTAGTGAAGTTCGCTTAATCTCTAGTAAAGAATCAAGCAAAAATGACCGCTTCAGCGGTT
ATGCAGGAGAGACATCAGGCAAGGTACAAACACTTTCCGAAATCAGCTTACAAGAAGTGCCTCGTTTTAGCAGTGGGTTT
AATGAGCTTGATCGTGTACTCGGCGGTGGCGTGGTTCCCGGTTCTGCTATTCTCATCGGGGGACATCCTGGTGCAGGAAA
ATCGACACTATTACTGCAAGTGATGTGCGGCTTATCAAAAATGCTACCGACACTCTATGTCACCGGTGAAGAATCATTAC
AACAGGTTGCAATGCGTGCTAATCGTTTAGGGCTACCAACTGATAATCTGAAAATGCTTTCGGAAACATCTGTCGAACAT
ATTTGCAATATTGCCGACCAAGAAAAACCTAAATTAATGGTAATTGACTCTATTCAAGTGATGCATTTATCCGATATTCA
ATCCTCGCCGGGTTCTGTTGCTCAAGTGCGAGAATGCGCATCATTTCTTACCCGCTATGCCAAAACACGCCAAGTGGCAA
TTATTATGGTCGGTCACGTCACCAAAGACGGTACGCTTGCCGGCCCAAAAGTGTTGGAACACGCTATTGATGCCTCATTA
TTGCTAGAAGGTGAATCTGATTCACGTTTCAGAACATTACGAAGCCAAAAAAACCGATTCGGCGCGGTAAATGAACTTGG
TGTGTTTGCTATGACTGAACAAGGTTTGCGAGAAGTTAAAAATCCATCCGCTATTTTTTTAAGCCGTAGTGATGAATTGG
TTTCAGGCAGTTCTGTTATGGTTCTTTGGGAAGGGACTCGTCCGTTATTAGTTGAAATTCAAGCGCTTGTTGATCATTCA
ATGCTTGCAAATCCACGTCGTGTGGCTGTCGGTTTAGATCATAATCGCTTATCGCTCTTACTTGCTGTACTCCACCGCCA
TGGTGGGCTACAAATGTCTGACCAAGATGTTTTTGTTAACGTTGTCGGGGGCGTAAAAGTAACGGAAACCAGTGCTGATC
TCGCTTTAATTTTGGCACTGATATCAAGTTTTAGAAATCGTCCATTACCACAGGACTTAGTAATTTTTGGTGAAGTAGGG
CTTGCCGGCGAAATTCGTCCGGTGCCGAGTGGTCAAGAACGTATTAGCGAAGCGGCAAAACACGGTTTTAAACGTGCAAT
CGTGCCGTTTAGCAATATGCCGAAAAAACCGATAAAAGATATGGAAGTGATTGGGGTTAAAAAATTAAGTGATGCGCTAG
ATGCACTTGGTAATTTATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(83-224)

Subunit ChlI of Mg-chelatase (ChlI)

(347-432)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

99.564

0.488
  radA Streptococcus mitis NCTC 12261

44.835

99.129

0.444
  radA Streptococcus pneumoniae Rx1

44.615

99.129

0.442
  radA Streptococcus pneumoniae D39

44.615

99.129

0.442
  radA Streptococcus pneumoniae R6

44.615

99.129

0.442
  radA Streptococcus pneumoniae TIGR4

44.615

99.129

0.442
  radA Streptococcus mitis SK321

44.615

99.129

0.442