Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NYR73_RS05060 Genome accession   NZ_CP103818
Coordinates   1112615..1113994 (+) Length   459 a.a.
NCBI ID   WP_279443725.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 3874     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1107615..1118994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR73_RS05025 (NYR73_05025) yacG 1107901..1108089 (-) 189 WP_005623139.1 DNA gyrase inhibitor YacG -
  NYR73_RS05030 (NYR73_05030) coaE 1108071..1108709 (-) 639 WP_279454029.1 dephospho-CoA kinase -
  NYR73_RS05035 (NYR73_05035) - 1108731..1108883 (-) 153 WP_279454030.1 hypothetical protein -
  NYR73_RS05040 (NYR73_05040) - 1108930..1109406 (-) 477 WP_279454031.1 hypothetical protein -
  NYR73_RS05045 (NYR73_05045) - 1109406..1110599 (-) 1194 WP_279454032.1 type II secretion system F family protein -
  NYR73_RS05050 (NYR73_05050) pilB 1110592..1111977 (-) 1386 WP_279454033.1 GspE/PulE family protein Machinery gene
  NYR73_RS05055 (NYR73_05055) pilA 1111998..1112435 (-) 438 WP_005623151.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  NYR73_RS05060 (NYR73_05060) radA 1112615..1113994 (+) 1380 WP_279443725.1 DNA repair protein RadA Machinery gene
  NYR73_RS05065 (NYR73_05065) pepB 1114060..1115343 (+) 1284 WP_279454091.1 aminopeptidase PepB -
  NYR73_RS05070 (NYR73_05070) - 1115471..1116406 (+) 936 WP_278225782.1 KpsF/GutQ family sugar-phosphate isomerase -
  NYR73_RS05075 (NYR73_05075) greB 1116416..1116904 (+) 489 WP_005611555.1 transcription elongation factor GreB -
  NYR73_RS05080 (NYR73_05080) ribE 1116994..1117455 (-) 462 WP_005600491.1 6,7-dimethyl-8-ribityllumazine synthase -
  NYR73_RS05085 (NYR73_05085) - 1117566..1118771 (-) 1206 WP_279454034.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49712.40 Da        Isoelectric Point: 7.9500

>NTDB_id=725467 NYR73_RS05060 WP_279443725.1 1112615..1113994(+) (radA) [Actinobacillus equuli subsp. haemolyticus strain 3874]
MAKAPKTAYVCNDCGAEYSRWMGQCKECKAWNTISEVRLISSKESSKNDRFSGYAGETSGKVQTLSEISLQEVPRFSSGF
NELDRVLGGGVVPGSAILIGGHPGAGKSTLLLQVMCGLSKMLPTLYVTGEESLQQVAMRANRLGLPTDNLKMLSETSVEH
ICNIADQEKPKLMVIDSIQVMHLSDIQSSPGSVAQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDASL
LLEGESDSRFRTLRSQKNRFGAVNELGVFAMTEQGLREVKNPSAIFLSRSDELVSGSSVMVLWEGTRPLLVEIQALVDHS
MLANPRRVAVGLDHNRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALILALISSFRNRPLPQDLVIFGEVG
LAGEIRPVPSGQERISEAAKHGFKRAIVPFSNMPKKPIKDMEVIGVKKLSDALDALGNL

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=725467 NYR73_RS05060 WP_279443725.1 1112615..1113994(+) (radA) [Actinobacillus equuli subsp. haemolyticus strain 3874]
ATGGCAAAAGCACCGAAAACGGCTTACGTATGTAATGATTGTGGCGCAGAATATTCTCGCTGGATGGGTCAATGCAAAGA
GTGCAAAGCATGGAATACGATTAGTGAAGTTCGCTTAATCTCTAGTAAAGAATCAAGCAAAAATGACCGCTTCAGTGGCT
ATGCTGGAGAGACTTCAGGCAAGGTACAAACACTTTCCGAAATCAGCTTACAAGAAGTGCCTCGTTTTAGTAGTGGGTTT
AATGAGCTTGATCGTGTACTCGGCGGTGGTGTCGTGCCCGGTTCTGCTATTCTCATCGGGGGGCATCCTGGTGCGGGAAA
ATCAACCCTATTACTGCAAGTAATGTGTGGCTTATCAAAAATGCTACCGACGCTCTATGTCACTGGTGAAGAATCATTAC
AACAGGTTGCAATGCGTGCTAATCGTTTAGGGCTACCAACTGATAATCTGAAAATGCTTTCGGAAACATCTGTCGAACAT
ATTTGCAATATTGCCGACCAAGAAAAACCTAAATTAATGGTAATTGACTCTATTCAAGTGATGCATTTATCCGATATTCA
ATCCTCGCCGGGTTCTGTTGCTCAAGTACGAGAATGTGCATCATTTCTTACCCGCTATGCCAAAACACGCCAAGTGGCAA
TTATTATGGTCGGTCACGTCACCAAAGACGGTACGCTTGCCGGCCCAAAAGTGTTGGAACACGCTATTGATGCCTCATTA
TTGCTAGAAGGTGAATCTGATTCACGTTTCAGAACATTACGAAGCCAAAAAAACCGATTCGGCGCGGTAAATGAACTTGG
TGTGTTTGCTATGACTGAACAAGGTTTGCGAGAAGTTAAAAATCCATCCGCTATTTTTTTAAGCCGTAGTGATGAATTGG
TTTCAGGCAGTTCTGTTATGGTTCTTTGGGAAGGGACTCGTCCGTTATTAGTTGAAATTCAAGCGCTTGTTGATCATTCA
ATGCTTGCAAATCCACGTCGTGTGGCTGTCGGTTTAGATCATAATCGCTTATCGCTCTTACTTGCTGTACTCCATCGCCA
TGGTGGGCTACAAATGTCTGACCAAGATGTTTTTGTTAACGTTGTTGGGGGCGTAAAAGTCACAGAGACCAGTGCCGATC
TTGCTTTAATTTTGGCACTGATCTCAAGTTTTAGAAATCGCCCGTTACCTCAGGACTTAGTAATTTTTGGTGAAGTAGGG
CTTGCCGGCGAAATTCGTCCGGTGCCGAGCGGCCAAGAACGTATTAGCGAAGCAGCAAAACACGGTTTTAAACGTGCAAT
CGTGCCGTTTAGCAATATGCCGAAAAAACCGATAAAAGATATGGAAGTGATTGGGGTTAAAAAATTAAGTGATGCGCTAG
ATGCACTTGGTAATTTATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(83-224)

Subunit ChlI of Mg-chelatase (ChlI)

(347-432)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

99.564

0.488
  radA Streptococcus mitis NCTC 12261

44.835

99.129

0.444
  radA Streptococcus pneumoniae Rx1

44.615

99.129

0.442
  radA Streptococcus pneumoniae D39

44.615

99.129

0.442
  radA Streptococcus pneumoniae R6

44.615

99.129

0.442
  radA Streptococcus pneumoniae TIGR4

44.615

99.129

0.442
  radA Streptococcus mitis SK321

44.615

99.129

0.442