Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   PY824_RS04225 Genome accession   NZ_CP119172
Coordinates   763092..766334 (+) Length   1080 a.a.
NCBI ID   WP_014294310.1    Uniprot ID   A0A081JI69
Organism   Streptococcus macedonicus strain SGM CIP105683     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 758092..771334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY824_RS04205 (PY824_04205) - 758167..758412 (+) 246 Protein_759 GNAT family N-acetyltransferase -
  PY824_RS04210 (PY824_04210) pheS 758862..759905 (+) 1044 WP_013642932.1 phenylalanine--tRNA ligase subunit alpha -
  PY824_RS04215 (PY824_04215) - 759941..760465 (+) 525 WP_014294308.1 N-acetyltransferase -
  PY824_RS04220 (PY824_04220) pheT 760537..762942 (+) 2406 WP_014294309.1 phenylalanine--tRNA ligase subunit beta -
  PY824_RS04225 (PY824_04225) rexB 763092..766334 (+) 3243 WP_014294310.1 ATP-dependent nuclease subunit B Machinery gene
  PY824_RS04230 (PY824_04230) rexA 766324..769956 (+) 3633 WP_014294311.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  PY824_RS04235 (PY824_04235) - 770049..771194 (-) 1146 WP_014294312.1 cobalamin-independent methionine synthase II family protein -

Sequence

Protein


Download         Length: 1080 a.a.        Molecular weight: 124130.67 Da        Isoelectric Point: 5.0922

>NTDB_id=725417 PY824_RS04225 WP_014294310.1 763092..766334(+) (rexB) [Streptococcus macedonicus strain SGM CIP105683]
MKLLYTDIQYDMTEILVGEAVAQADAGKRVFYIAPNSLSFEKERAVLELLPEEASFAITVTRFAQMARYFVLNEVQVKES
IDDNGLAMIFYRALSHFSDTDLKVFGRLKQDTNFIKQLVDLYKELKTANMTVLDLTELHSAEKQEDLVKIFLAVNDILLV
NQYDNQSKIAYFAKQVEAGHLDAMLENVSLVIDGFTRFSAEEEYLVSLLEEKCAQVIIGTYSSQKAYRAAFSTGNVYQAS
LDFLRGLAAKFHVQPQYVESSQKYHEAFSKLSKLFEAKHDFTSSDVTLTADDKKHYAIWDVINQKEEVEHVAKAIRHKLY
QGYRYKDILVLLGDVDSYRLQIGKIFDKYDIPYYFGKAESMSDHPLVHFIDSLERVKRYRFRTEDVVNLLKTGLYGNFKQ
EDLDLFEQYLIYADIKGQSKFAKEFTIVYKGKKHLAFVNRMREQIMTPLLALFKAQKQHGSSLLEKLMTFLHAIHLPDNL
EGMVATFSENEQEKHEQVWRTFTGILTQFQTIFGQEKLSLDDCLSLIRSGMLAAQYRVVPATVDVVSVKSYDLVEPHTNK
FVFALGMTQAHFPKIAQNSSLISDEERAQINESTDDNQRFDIVSRENIKKNHFAALSLFNSATEELVLSLPQIANEAEDT
ESSYLTELASFGVPVLAKGCNRLSTDAEDIGNYKALLSRVIEVNRLAIEEERELSKEEQTFWSVAVRYLRKKLAAEGIEL
PLIKDNMQTKTVSADVIEARFPSDEPISLSSSAVTTFYNNQYKYFLQYVLGLQEVETIHPDARNHGTYLHRVFELVMKDD
SNHSFDSKLDKAIQTTNLEDDFKFVYKEDEESRYSLTVLEDIARSTATILRDDAQIQVESEEETFDLMIANSVRIRGIID
RVDRLSDGSLGIVDYKSSRNTFDIQKFYNGLSPQLVTYVQALRDKKGLSESEHIFGAMYLHMQEPKVDLSSVATTEKILE
NLAKELTYRGLFLEDEKAYLANGRYHLNDSLYSQEELDILLAYNQNLYLKAAEQIKKGHFLINPYSEDGKSVQGDQLKAI
TRFEADRHMPYARKWYKLPRKDRRQGFLSLMQEEEETDDL

Nucleotide


Download         Length: 3243 bp        

>NTDB_id=725417 PY824_RS04225 WP_014294310.1 763092..766334(+) (rexB) [Streptococcus macedonicus strain SGM CIP105683]
ATGAAATTACTATACACAGATATTCAGTATGATATGACTGAGATTTTAGTTGGAGAGGCAGTAGCGCAGGCAGATGCTGG
TAAGCGTGTTTTTTACATTGCTCCCAATTCTTTATCTTTTGAAAAAGAAAGAGCAGTTTTGGAGTTGTTACCAGAAGAAG
CTTCTTTTGCGATTACGGTAACACGTTTTGCTCAAATGGCTCGTTATTTTGTGTTAAATGAAGTGCAGGTCAAGGAAAGC
ATTGATGACAATGGCTTGGCTATGATTTTTTACCGTGCTTTGTCACATTTTTCAGATACAGATTTGAAAGTTTTTGGGCG
TTTGAAGCAGGATACGAATTTTATCAAGCAGTTGGTTGATTTGTACAAAGAATTAAAAACGGCTAACATGACTGTGCTTG
ATTTGACAGAATTGCATTCAGCGGAGAAACAGGAAGATTTGGTGAAAATCTTTTTAGCGGTTAATGATATTTTGCTTGTC
AATCAGTATGATAATCAGAGCAAGATTGCTTATTTTGCAAAGCAGGTTGAGGCAGGACATTTGGATGCTATGCTTGAAAA
TGTGAGCCTTGTCATTGACGGTTTTACACGCTTTTCAGCAGAAGAAGAGTATCTAGTAAGCTTGCTTGAAGAAAAATGTG
CGCAAGTGATTATCGGAACTTACAGTAGTCAAAAGGCGTATAGAGCGGCATTTTCGACGGGAAATGTTTACCAAGCGAGT
TTAGATTTCTTGCGTGGTTTAGCAGCTAAATTCCATGTGCAACCGCAGTATGTTGAAAGTTCTCAGAAATATCACGAGGC
TTTTTCAAAATTATCGAAATTATTCGAAGCAAAGCACGACTTTACGAGTTCAGATGTGACGCTGACGGCTGATGATAAAA
AACATTACGCTATTTGGGATGTCATTAATCAGAAAGAAGAGGTCGAGCATGTGGCGAAAGCTATTCGACATAAGCTTTAT
CAAGGGTATCGTTACAAGGATATTTTAGTGCTCTTAGGTGATGTGGACAGCTATCGTTTGCAAATTGGCAAGATTTTTGA
CAAATATGACATTCCTTATTATTTTGGAAAAGCGGAGTCAATGAGTGACCATCCTTTGGTGCATTTTATTGATTCGTTGG
AGCGTGTGAAGCGTTATCGTTTTCGTACCGAAGATGTCGTTAATCTGTTAAAAACAGGGCTTTATGGAAATTTCAAGCAA
GAAGATTTAGACCTTTTTGAGCAATATTTGATTTATGCTGATATTAAGGGACAAAGCAAATTTGCTAAGGAATTCACGAT
TGTTTATAAAGGAAAAAAACATTTAGCCTTTGTTAATCGCATGCGCGAGCAAATCATGACGCCTTTACTTGCTTTATTTA
AGGCGCAAAAGCAACATGGCTCTAGTTTGCTTGAGAAATTAATGACATTTTTACACGCCATTCATTTACCTGATAATCTA
GAAGGCATGGTAGCGACTTTTTCAGAAAATGAACAAGAAAAGCATGAGCAAGTTTGGCGGACATTTACAGGTATTTTAAC
GCAATTTCAAACGATTTTTGGGCAAGAAAAGTTATCGTTGGATGACTGTTTATCCTTGATTCGCAGCGGAATGTTAGCTG
CGCAGTACCGTGTGGTGCCTGCAACGGTTGATGTTGTTTCGGTCAAATCTTATGATTTGGTTGAACCGCACACCAATAAA
TTTGTCTTTGCTTTGGGCATGACGCAGGCACATTTTCCAAAAATTGCGCAAAATAGTAGTCTGATTTCAGATGAAGAACG
TGCCCAAATTAACGAATCAACTGATGATAATCAACGTTTTGATATTGTTAGTCGCGAAAATATCAAGAAAAATCATTTTG
CTGCCCTATCGTTGTTCAACTCGGCGACAGAAGAATTGGTGCTTAGTCTGCCACAAATTGCCAACGAAGCCGAAGATACG
GAATCTTCTTACTTAACCGAATTGGCTAGCTTTGGTGTGCCAGTTCTTGCTAAAGGTTGTAATCGTTTGTCAACGGATGC
CGAGGACATTGGCAATTATAAGGCTTTATTGTCGCGCGTGATTGAAGTCAATCGTTTGGCGATTGAAGAAGAGCGTGAAC
TTAGCAAGGAAGAGCAAACTTTCTGGTCAGTTGCTGTTCGTTATCTTCGAAAAAAATTGGCAGCAGAAGGTATTGAATTG
CCGCTGATTAAGGATAATATGCAAACTAAGACGGTCTCTGCCGACGTGATTGAGGCACGTTTTCCAAGCGATGAGCCGAT
TTCGTTATCATCATCTGCAGTTACTACCTTCTACAATAATCAGTATAAATATTTTTTGCAATATGTTCTTGGCTTGCAAG
AGGTTGAGACGATTCACCCAGATGCCAGAAATCATGGTACCTACCTGCACCGTGTTTTTGAATTGGTCATGAAAGATGAT
TCAAACCATTCTTTTGATAGCAAACTTGATAAAGCTATTCAAACAACGAATTTGGAAGACGATTTCAAATTTGTTTACAA
AGAAGATGAAGAAAGTCGTTATTCTTTGACTGTCTTGGAAGATATTGCTAGAAGTACGGCAACGATTTTACGTGATGATG
CTCAGATTCAAGTTGAAAGTGAAGAAGAAACGTTTGACTTAATGATTGCAAATAGCGTTCGTATCAGAGGAATTATTGAC
CGTGTTGACCGCTTATCAGACGGCAGTCTTGGCATTGTGGATTACAAATCAAGTCGCAATACTTTTGATATTCAGAAATT
CTACAATGGTTTAAGTCCGCAATTGGTGACTTACGTGCAAGCTTTGCGTGATAAAAAAGGCTTGAGCGAGTCGGAGCATA
TTTTTGGCGCTATGTATTTGCATATGCAAGAGCCAAAAGTTGATTTGTCATCGGTGGCTACGACAGAGAAAATTTTAGAA
AATTTGGCTAAAGAGTTGACTTATCGTGGTCTATTCTTGGAAGATGAAAAAGCGTATTTAGCCAATGGTCGCTATCATCT
GAATGATTCGCTTTACAGTCAAGAAGAACTTGATATTTTGCTAGCTTATAATCAAAACTTATATCTGAAAGCGGCAGAGC
AGATTAAGAAGGGGCATTTCTTGATTAATCCTTATAGTGAGGACGGCAAATCAGTTCAAGGAGACCAATTGAAGGCAATC
ACACGATTTGAGGCTGACCGCCATATGCCTTATGCTCGCAAATGGTATAAATTACCAAGAAAAGATAGACGTCAAGGCTT
TTTGAGCCTAATGCAAGAAGAGGAGGAAACAGATGATCTTTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(748-1026)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A081JI69

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

44.167

100

0.442