Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   NYR62_RS07545 Genome accession   NZ_CP103809
Coordinates   1659589..1659933 (+) Length   114 a.a.
NCBI ID   WP_279475153.1    Uniprot ID   -
Organism   Actinobacillus genomosp. 1 strain CCUG22229     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1654589..1664933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR62_RS07520 (NYR62_07520) rpsL 1654702..1655076 (-) 375 WP_005543325.1 30S ribosomal protein S12 -
  NYR62_RS07525 (NYR62_07525) rfaC 1655197..1656156 (-) 960 WP_279475148.1 lipopolysaccharide heptosyltransferase RfaC -
  NYR62_RS07530 (NYR62_07530) waaF 1656231..1657268 (-) 1038 WP_279475150.1 lipopolysaccharide heptosyltransferase II -
  NYR62_RS07535 (NYR62_07535) - 1657350..1657754 (-) 405 WP_279468402.1 GlcNAc transferase -
  NYR62_RS07540 (NYR62_07540) - 1657876..1659282 (-) 1407 WP_279475151.1 LysM-like peptidoglycan-binding domain-containing protein -
  NYR62_RS07545 (NYR62_07545) comEA/comE1 1659589..1659933 (+) 345 WP_279475153.1 ComEA family DNA-binding protein Machinery gene
  NYR62_RS07550 (NYR62_07550) asd 1660083..1660973 (+) 891 WP_279468404.1 archaetidylserine decarboxylase -
  NYR62_RS07555 (NYR62_07555) - 1661090..1663453 (+) 2364 WP_279475154.1 DEAD/DEAH box helicase family protein -

Sequence

Protein


Download         Length: 114 a.a.        Molecular weight: 12387.33 Da        Isoelectric Point: 9.9761

>NTDB_id=725234 NYR62_RS07545 WP_279475153.1 1659589..1659933(+) (comEA/comE1) [Actinobacillus genomosp. 1 strain CCUG22229]
MKKLTTLSISFMIALLSGNTIAKPNQVSASEPTPVVQQATMTEKTIEKQNQVNINTADAAEIKAKLVGIGEKKAQAIVDY
RTKNGSFITIEQLTEVSGIGKATLEKNRERIVLE

Nucleotide


Download         Length: 345 bp        

>NTDB_id=725234 NYR62_RS07545 WP_279475153.1 1659589..1659933(+) (comEA/comE1) [Actinobacillus genomosp. 1 strain CCUG22229]
ATGAAAAAACTTACCACACTTAGCATTAGCTTCATGATTGCTCTGCTATCCGGCAATACGATAGCTAAACCAAATCAAGT
ATCCGCATCGGAACCTACACCTGTTGTTCAGCAAGCGACTATGACGGAAAAAACTATCGAGAAACAGAACCAAGTCAATA
TCAATACGGCTGATGCGGCGGAAATAAAAGCGAAACTGGTCGGCATCGGCGAGAAAAAAGCACAAGCGATAGTCGATTAT
CGCACTAAAAACGGTTCTTTTATTACTATAGAGCAACTTACCGAAGTATCCGGTATCGGTAAAGCAACGCTAGAGAAAAA
TCGTGAACGCATTGTACTAGAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(48-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

59.13

100

0.596
  comE1/comEA Haemophilus influenzae Rd KW20

46.018

99.123

0.456