Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NYR62_RS04490 Genome accession   NZ_CP103809
Coordinates   1019443..1020822 (+) Length   459 a.a.
NCBI ID   WP_279458429.1    Uniprot ID   -
Organism   Actinobacillus genomosp. 1 strain CCUG22229     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1014443..1025822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR62_RS04460 (NYR62_04460) yacG 1014725..1014913 (-) 189 WP_279458423.1 DNA gyrase inhibitor YacG -
  NYR62_RS04465 (NYR62_04465) coaE 1014895..1015533 (-) 639 WP_279476592.1 dephospho-CoA kinase -
  NYR62_RS04470 (NYR62_04470) - 1015554..1016198 (-) 645 WP_347710247.1 prepilin peptidase -
  NYR62_RS04475 (NYR62_04475) - 1016219..1017421 (-) 1203 WP_279476595.1 type II secretion system F family protein -
  NYR62_RS04480 (NYR62_04480) pilB 1017405..1018799 (-) 1395 WP_279476596.1 GspE/PulE family protein Machinery gene
  NYR62_RS04485 (NYR62_04485) pilA 1018817..1019263 (-) 447 WP_279476597.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  NYR62_RS04490 (NYR62_04490) radA 1019443..1020822 (+) 1380 WP_279458429.1 DNA repair protein RadA Machinery gene
  NYR62_RS04495 (NYR62_04495) - 1020866..1021099 (-) 234 WP_115589814.1 YgjV family protein -
  NYR62_RS04500 (NYR62_04500) folA 1021229..1021717 (-) 489 WP_279476598.1 type 3 dihydrofolate reductase -
  NYR62_RS04505 (NYR62_04505) proB 1021804..1022895 (+) 1092 WP_279458431.1 glutamate 5-kinase -
  NYR62_RS04510 (NYR62_04510) - 1022911..1023687 (+) 777 WP_279458432.1 TSUP family transporter -
  NYR62_RS04515 (NYR62_04515) nth 1023688..1024320 (+) 633 WP_267978577.1 endonuclease III -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49716.29 Da        Isoelectric Point: 7.9094

>NTDB_id=725225 NYR62_RS04490 WP_279458429.1 1019443..1020822(+) (radA) [Actinobacillus genomosp. 1 strain CCUG22229]
MAKAPKTAYVCNDCGAEYSRWMGQCKECKAWNTISEVRLISAKESNKNDRFSGYAGETSGKVQTLSEISLQEVPRFSSGF
NELDRVLGGGVVPGSAILIGGHPGAGKSTLLLQVMCGLAKDLPTLYVTGEESLQQVAMRANRLGLPTENLKMLSETSVEH
ICNIADQEKPKIMVIDSIQVMHLADIQSSPGSVSQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHCIDASI
LLEGESDSRFRTLRSQKNRFGAVNELGVFAMTEQGLREVKNPSAIFLSRSDEQTPGSSVMVLWEGTRPLLVEIQALVDHS
MLANPRRVAVGLDHNRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALILALISSFRNRSLPQDLVVFGEVG
LAGEIRPVPSGQERISEAAKHGFKRAIIPHGNAPKKPIKGMEVFTVKKLSDALDILGNL

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=725225 NYR62_RS04490 WP_279458429.1 1019443..1020822(+) (radA) [Actinobacillus genomosp. 1 strain CCUG22229]
ATGGCAAAGGCACCTAAAACAGCTTATGTATGTAATGATTGCGGCGCGGAATATTCTCGCTGGATGGGACAATGTAAAGA
GTGCAAGGCATGGAATACGATTAGCGAAGTTCGCTTAATTTCCGCTAAAGAATCAAATAAAAACGACCGCTTCAGCGGTT
ATGCCGGAGAGACCTCCGGCAAAGTACAAACATTATCTGAAATCAGCTTACAAGAAGTCCCTCGTTTCAGCAGCGGTTTT
AATGAACTGGATCGCGTACTGGGCGGCGGTGTTGTACCGGGTTCGGCGATTTTAATCGGCGGTCATCCCGGTGCCGGTAA
ATCCACCTTGCTTTTGCAAGTCATGTGCGGATTAGCTAAAGATTTACCGACGCTTTATGTCACCGGTGAAGAATCCTTAC
AACAGGTGGCGATGAGGGCTAACCGTTTAGGCTTACCGACCGAAAATTTAAAAATGCTTTCCGAAACCTCCGTTGAGCAT
ATTTGTAATATTGCCGACCAAGAAAAACCGAAAATTATGGTGATAGACTCTATCCAAGTGATGCACCTTGCCGATATTCA
ATCTTCTCCCGGCAGTGTTTCTCAAGTGCGGGAGTGTGCTTCGTTTTTAACTCGCTATGCGAAAACACGGCAAGTAGCGA
TTATTATGGTCGGACACGTAACCAAAGACGGTACTCTCGCCGGCCCTAAAGTATTAGAGCATTGTATTGACGCGTCGATT
TTACTGGAAGGCGAATCGGATTCTCGATTCCGTACCTTACGCAGCCAGAAAAACCGTTTCGGTGCGGTCAATGAATTGGG
CGTATTTGCCATGACCGAACAAGGTTTACGAGAAGTAAAAAATCCTTCTGCGATTTTCCTTAGCCGTAGTGATGAGCAAA
CACCGGGCAGTTCCGTAATGGTACTTTGGGAAGGAACCCGTCCGTTATTAGTTGAAATTCAAGCGTTAGTCGATCACTCT
ATGTTAGCCAACCCTCGTCGTGTTGCGGTCGGATTGGATCATAACCGGTTATCCTTATTACTTGCGGTATTACATCGGCA
TGGTGGTTTGCAAATGTCGGATCAAGATGTGTTCGTTAATGTAGTCGGTGGGGTAAAAGTGACCGAGACCAGTGCCGATC
TCGCCCTAATTTTGGCGTTAATTTCCAGTTTTAGAAATCGCTCGTTACCACAAGATTTAGTGGTATTCGGCGAAGTCGGG
TTAGCCGGTGAAATTCGCCCGGTACCGAGCGGTCAGGAACGTATTAGCGAAGCGGCGAAACACGGCTTTAAACGCGCGAT
CATTCCGCATGGCAACGCCCCCAAAAAACCGATTAAAGGCATGGAAGTGTTTACCGTTAAAAAATTAAGCGACGCACTGG
ATATCCTCGGCAATCTCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(83-224)

Subunit ChlI of Mg-chelatase (ChlI)

(347-432)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.359

99.564

0.481
  radA Streptococcus mitis NCTC 12261

44.273

98.911

0.438
  radA Streptococcus mitis SK321

44.053

98.911

0.436
  radA Streptococcus pneumoniae Rx1

45.349

93.682

0.425
  radA Streptococcus pneumoniae D39

45.349

93.682

0.425
  radA Streptococcus pneumoniae R6

45.349

93.682

0.425
  radA Streptococcus pneumoniae TIGR4

45.349

93.682

0.425