Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   NYR61_RS06835 Genome accession   NZ_CP103808
Coordinates   1499158..1499706 (-) Length   182 a.a.
NCBI ID   WP_279468241.1    Uniprot ID   -
Organism   Actinobacillus genomosp. 1 strain CCUG22231     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1494158..1504706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR61_RS06820 (NYR61_06820) - 1494507..1495028 (+) 522 WP_279468239.1 SprT family zinc-dependent metalloprotease -
  NYR61_RS06825 (NYR61_06825) - 1495139..1496419 (+) 1281 WP_279469516.1 NAD(P)/FAD-dependent oxidoreductase -
  NYR61_RS06830 (NYR61_06830) - 1496743..1499082 (-) 2340 WP_279468240.1 Tex family protein -
  NYR61_RS06835 (NYR61_06835) pilF 1499158..1499706 (-) 549 WP_279468241.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  NYR61_RS06840 (NYR61_06840) - 1499760..1500941 (-) 1182 WP_279456841.1 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -
  NYR61_RS06865 (NYR61_06865) gltX 1501848..1503287 (+) 1440 WP_279456842.1 glutamate--tRNA ligase -
  NYR61_RS06875 (NYR61_06875) yefM 1503788..1504039 (+) 252 WP_279456843.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  NYR61_RS06880 (NYR61_06880) - 1504036..1504296 (+) 261 WP_237611416.1 Txe/YoeB family addiction module toxin -
  NYR61_RS06885 (NYR61_06885) - 1504454..1504621 (-) 168 WP_279468242.1 Trm112 family protein -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20600.45 Da        Isoelectric Point: 8.4448

>NTDB_id=725203 NYR61_RS06835 WP_279468241.1 1499158..1499706(-) (pilF) [Actinobacillus genomosp. 1 strain CCUG22231]
MNLAKFLRNLTACMLLSVLFGCSSQLPTSQTTFNRSEAVKARINLALAYLDQHDLPKAKENIDKALSHAQNDYLPHSVLA
YYYQQIGDQVRAEQAYQQALKLSDNRPDVLNNYGTFLCKQAKFSLAYQQFEQAVQSKQPYYHQADSLENIVLCAKQEPNL
AKVNDALSQLEKLDKARAAVLR

Nucleotide


Download         Length: 549 bp        

>NTDB_id=725203 NYR61_RS06835 WP_279468241.1 1499158..1499706(-) (pilF) [Actinobacillus genomosp. 1 strain CCUG22231]
ATGAACCTTGCAAAATTTTTGCGAAATTTGACCGCTTGTATGCTGTTATCCGTGTTGTTCGGTTGTTCTTCTCAGCTTCC
TACCTCTCAAACCACTTTTAATCGCTCGGAAGCGGTTAAAGCGCGTATCAATTTAGCCTTAGCGTATCTCGATCAACATG
ATTTACCCAAAGCGAAAGAGAATATTGATAAAGCGCTAAGCCATGCTCAAAATGATTACTTACCTCACTCCGTTTTAGCT
TATTACTATCAGCAAATCGGTGATCAAGTTCGTGCCGAACAGGCTTATCAGCAAGCGTTGAAATTAAGTGATAACCGTCC
GGATGTCTTAAATAATTACGGCACGTTTTTGTGTAAACAAGCTAAGTTCAGTCTGGCATACCAACAATTTGAACAAGCGG
TGCAAAGCAAGCAACCTTACTATCATCAAGCAGATAGCCTAGAAAATATCGTGTTATGCGCCAAACAAGAGCCGAATTTA
GCTAAAGTAAACGACGCATTAAGCCAATTAGAAAAGTTGGATAAAGCAAGAGCGGCGGTACTGCGTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Glaesserella parasuis strain SC1401

65.426

100

0.676
  pilF/pilF2 Haemophilus influenzae Rd KW20

45.614

93.956

0.429