Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   A6P39_RS20670 Genome accession   NZ_CP119133
Coordinates   4645305..4645904 (-) Length   199 a.a.
NCBI ID   WP_031164801.1    Uniprot ID   A0A1S2P984
Organism   Streptomyces sp. FXJ1.172     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4640305..4650904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6P39_RS20660 (A6P39_020670) - 4640434..4644639 (+) 4206 WP_067055360.1 hypothetical protein -
  A6P39_RS20665 (A6P39_020675) - 4644650..4645312 (-) 663 WP_067055357.1 DUF5063 domain-containing protein -
  A6P39_RS20670 (A6P39_020680) recR 4645305..4645904 (-) 600 WP_031164801.1 recombination mediator RecR Machinery gene
  A6P39_RS20675 (A6P39_020685) - 4645956..4646300 (-) 345 WP_067055354.1 YbaB/EbfC family nucleoid-associated protein -
  A6P39_RS20680 (A6P39_020690) - 4646587..4647336 (+) 750 WP_067055351.1 SLATT domain-containing protein -
  A6P39_RS20685 (A6P39_020695) - 4647414..4649360 (-) 1947 WP_067055348.1 serine/threonine-protein kinase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21760.13 Da        Isoelectric Point: 4.9909

>NTDB_id=725063 A6P39_RS20670 WP_031164801.1 4645305..4645904(-) (recR) [Streptomyces sp. FXJ1.172]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVKRLAQALLEVKAKVRFCATCGNVAQEELCNICRDPRRDPSV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=725063 A6P39_RS20670 WP_031164801.1 4645305..4645904(-) (recR) [Streptomyces sp. FXJ1.172]
GTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAGCTGGGGCGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCGGAACCGACGGACGTGAAGCGCCTCGCCCAGGCCCTGCTGGAGGTGAAGGCGAAGGTCC
GCTTCTGCGCGACCTGCGGCAACGTGGCACAGGAGGAGCTGTGCAACATCTGCCGTGACCCGCGCCGCGACCCGTCGGTC
ATCTGCGTGGTGGAGGAGCCGAAGGACGTGGTGGCGATCGAGCGCACCCGCGAATTCCGCGGCCGCTACCACGTCCTGGG
CGGCGCCATCAGCCCGATCGAGGGTGTCGGTCCCGACGACCTGCGTATACGAGAACTTCTCGCGCGGTTGGCCGACGGGA
CGGTCACGGAACTGATCCTGGCGACGGACCCGAACCTGGAGGGCGAGGCCACCGCGACCTACCTCGCCCGGATGATCAAA
CCCATGGGCCTGAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGCGGCGACCTGGAATACGCGGACGAGGTGACCCT
CGGCCGCGCCTTCGAGGGGAGACGACTTCTAGATGTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(79-170)

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S2P984

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

47.423

97.487

0.462