Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   A6P39_RS19770 Genome accession   NZ_CP119133
Coordinates   4448889..4450298 (+) Length   469 a.a.
NCBI ID   WP_067052712.1    Uniprot ID   -
Organism   Streptomyces sp. FXJ1.172     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4443889..4455298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6P39_RS19750 (A6P39_019760) - 4444106..4444918 (-) 813 WP_067038975.1 sugar phosphate isomerase/epimerase -
  A6P39_RS19755 (A6P39_019765) - 4445042..4445974 (-) 933 WP_275883878.1 Ppx/GppA phosphatase family protein -
  A6P39_RS19760 (A6P39_019770) - 4446046..4446906 (+) 861 WP_199840948.1 hypothetical protein -
  A6P39_RS19765 (A6P39_019775) - 4446958..4448670 (-) 1713 WP_067052710.1 sigma-70 family RNA polymerase sigma factor -
  A6P39_RS19770 (A6P39_019780) radA/sms 4448889..4450298 (+) 1410 WP_067052712.1 DNA repair protein RadA Machinery gene
  A6P39_RS19775 (A6P39_019785) disA 4450379..4451503 (+) 1125 WP_067052714.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  A6P39_RS19780 (A6P39_019790) - 4451560..4452381 (-) 822 WP_199840949.1 hypothetical protein -
  A6P39_RS19785 (A6P39_019795) - 4452561..4453436 (+) 876 WP_067052717.1 A/G-specific adenine glycosylase -
  A6P39_RS19790 (A6P39_019800) - 4453718..4454257 (+) 540 WP_067052719.1 SigE family RNA polymerase sigma factor -
  A6P39_RS19795 (A6P39_019805) - 4454299..4454889 (+) 591 WP_275883988.1 hypothetical protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49779.93 Da        Isoelectric Point: 8.0106

>NTDB_id=725058 A6P39_RS19770 WP_067052712.1 4448889..4450298(+) (radA/sms) [Streptomyces sp. FXJ1.172]
MAARTKTTKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGTPAVRTTAPGRVTTSALPIGQVDGRQATARTTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKSASAEHRTLYVTGEESASQVRLRADRIGALDDHLYLAAETDLSAVL
GHLDEVKPSLLILDSVQTVASPQIEGAPGGMAQVREVAGALIRASKDRGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGKVPPGMKVLEVADMGDALRVLPRSRRREAPREAEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=725058 A6P39_RS19770 WP_067052712.1 4448889..4450298(+) (radA/sms) [Streptomyces sp. FXJ1.172]
ATGGCTGCCCGTACGAAGACCACCAAGGACCGCCCGTCCTACCGCTGCACGGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCGGAGTGCCAGGCCTGGGGCACGGTCGAGGAGTACGGCACGCCCGCGGTCCGCACGACGGCACCGGGCC
GTGTCACCACCTCGGCGCTGCCCATCGGCCAGGTCGACGGCCGGCAGGCCACCGCCCGCACGACCGGCGTGCCCGAGCTG
GACCGGGTGCTCGGCGGCGGTCTCGTGCCCGGAGCGGTCGTCCTGCTCGCGGGCGAGCCCGGCGTCGGCAAGTCCACCTT
GCTGCTGGACGTGGCCGCCAAGTCCGCGAGCGCCGAGCACCGCACGCTCTATGTCACCGGCGAGGAGTCGGCGAGCCAGG
TGCGGCTGCGCGCGGACCGCATCGGCGCGCTGGACGACCATCTGTACCTGGCCGCCGAGACCGACCTGTCCGCCGTGCTC
GGCCACTTGGACGAGGTCAAGCCGTCCCTGCTGATCCTGGACTCGGTGCAGACGGTCGCCTCCCCCCAGATCGAGGGCGC
GCCCGGCGGCATGGCCCAGGTGCGGGAGGTCGCCGGGGCGCTCATCCGGGCGTCCAAGGACCGGGGCATGTCCACACTGC
TGGTGGGCCATGTCACCAAGGACGGCGCGATCGCGGGCCCCCGCCTCCTGGAGCACCTGGTGGACGTCGTCCTGCACTTC
GAGGGCGACCGGCACGCGCGCCTGCGCCTGGTGCGCGGCGTGAAGAACCGCTACGGCGCCACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGCCTCGCCGACCCCAGCGGCCTGTTCCTGACCCGGCGGGACGAGCCGGTGCCGG
GCACCTGCCTGACCGTCACCCTGGAGGGCCGCCGCCCGCTGGTGGCCGAGGTGCAGGCGCTGACCGTCGACTCGCAGATT
CCCTCCCCGCGCCGTACGACGTCGGGCCTGGAGACCTCCCGGGTGTCGATGATGCTCGCGGTGCTGGAGCAGCGTGGCCG
CATCAGCGCGCTCGGCAAGCGGGACATCTACTCCGCGACGGTGGGCGGGGTGAAGCTGTCCGAGCCGGCCGCCGACCTCG
CCGTGGCGCTGGCGCTCGCCTCCGCCGCCAGCGACACCCCGCTGCCGAAGAACCTGGTGGCCATCGGCGAGGTGGGCCTC
GCGGGCGAGGTCAGACGGGTCACGGGTGTGCAGCGCCGGCTCGCCGAGGCGCACCGGCTGGGCTTCACGCACGCGCTCGT
GCCGACCGATCCGGGCAAGGTGCCGCCCGGTATGAAGGTCCTGGAAGTCGCGGACATGGGGGACGCGCTGCGGGTCCTGC
CGCGCTCCCGTCGCCGAGAGGCCCCACGGGAGGCGGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.363

96.375

0.418
  radA Streptococcus mitis SK321

43.207

95.736

0.414
  radA Streptococcus mitis NCTC 12261

43.207

95.736

0.414
  radA Streptococcus pneumoniae Rx1

42.762

95.736

0.409
  radA Streptococcus pneumoniae D39

42.762

95.736

0.409
  radA Streptococcus pneumoniae R6

42.762

95.736

0.409
  radA Streptococcus pneumoniae TIGR4

42.762

95.736

0.409