Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NYR91_RS17740 Genome accession   NZ_CP103784
Coordinates   3443135..3443824 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain RO-NN-1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3438135..3448824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR91_RS17705 (NYR91_17705) flgN 3438316..3438798 (-) 483 WP_014478127.1 flagellar protein FlgN -
  NYR91_RS17710 (NYR91_17710) flgM 3438814..3439080 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  NYR91_RS17715 (NYR91_17715) yvyF 3439161..3439580 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  NYR91_RS17720 (NYR91_17720) comFC 3439653..3440375 (-) 723 WP_014478129.1 comF operon protein ComFC Machinery gene
  NYR91_RS17725 (NYR91_17725) comFB 3440339..3440635 (-) 297 WP_014478130.1 late competence protein ComFB -
  NYR91_RS17730 (NYR91_17730) comFA 3440695..3442086 (-) 1392 WP_014478131.1 ATP-dependent helicase ComFA Machinery gene
  NYR91_RS17735 (NYR91_17735) fakBA 3442192..3443037 (-) 846 WP_014478132.1 DegV family protein -
  NYR91_RS17740 (NYR91_17740) degU 3443135..3443824 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NYR91_RS17745 (NYR91_17745) degS 3443907..3445064 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  NYR91_RS17750 (NYR91_17750) yvyE 3445281..3445934 (+) 654 WP_003227979.1 YigZ family protein -
  NYR91_RS17755 (NYR91_17755) tagV 3445934..3447100 (+) 1167 WP_014478133.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  NYR91_RS17760 (NYR91_17760) tagO 3447173..3448249 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=725046 NYR91_RS17740 WP_003219701.1 3443135..3443824(-) (degU) [Bacillus subtilis strain RO-NN-1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=725046 NYR91_RS17740 WP_003219701.1 3443135..3443824(-) (degU) [Bacillus subtilis strain RO-NN-1]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAGGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1