Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   NYR91_RS17720 Genome accession   NZ_CP103784
Coordinates   3439653..3440375 (-) Length   240 a.a.
NCBI ID   WP_014478129.1    Uniprot ID   -
Organism   Bacillus subtilis strain RO-NN-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3434653..3445375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR91_RS17685 (NYR91_17685) fliW 3434793..3435224 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  NYR91_RS17690 (NYR91_17690) yviE 3435245..3435820 (-) 576 WP_014478125.1 DUF6470 family protein -
  NYR91_RS17695 (NYR91_17695) flgL 3435867..3436763 (-) 897 WP_014478126.1 flagellar hook-associated protein FlgL -
  NYR91_RS17700 (NYR91_17700) flgK 3436774..3438297 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  NYR91_RS17705 (NYR91_17705) flgN 3438316..3438798 (-) 483 WP_014478127.1 flagellar protein FlgN -
  NYR91_RS17710 (NYR91_17710) flgM 3438814..3439080 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  NYR91_RS17715 (NYR91_17715) yvyF 3439161..3439580 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  NYR91_RS17720 (NYR91_17720) comFC 3439653..3440375 (-) 723 WP_014478129.1 comF operon protein ComFC Machinery gene
  NYR91_RS17725 (NYR91_17725) comFB 3440339..3440635 (-) 297 WP_014478130.1 late competence protein ComFB -
  NYR91_RS17730 (NYR91_17730) comFA 3440695..3442086 (-) 1392 WP_014478131.1 ATP-dependent helicase ComFA Machinery gene
  NYR91_RS17735 (NYR91_17735) fakBA 3442192..3443037 (-) 846 WP_014478132.1 DegV family protein -
  NYR91_RS17740 (NYR91_17740) degU 3443135..3443824 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NYR91_RS17745 (NYR91_17745) degS 3443907..3445064 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27516.81 Da        Isoelectric Point: 9.3102

>NTDB_id=725044 NYR91_RS17720 WP_014478129.1 3439653..3440375(-) (comFC) [Bacillus subtilis strain RO-NN-1]
MSHEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFKGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=725044 NYR91_RS17720 WP_014478129.1 3439653..3440375(-) (comFC) [Bacillus subtilis strain RO-NN-1]
ATGTCACACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAA
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

98.333

100

0.983