Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NYR91_RS15735 Genome accession   NZ_CP103784
Coordinates   3043243..3043887 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain RO-NN-1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3038243..3048887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR91_RS15700 (NYR91_15700) mrpB 3039435..3039866 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  NYR91_RS15705 (NYR91_15705) mrpC 3039866..3040207 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  NYR91_RS15710 (NYR91_15710) mrpD 3040200..3041681 (+) 1482 WP_041519487.1 Na+/H+ antiporter subunit D -
  NYR91_RS15715 (NYR91_15715) mrpE 3041687..3042163 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  NYR91_RS15720 (NYR91_15720) mrpF 3042163..3042447 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  NYR91_RS15725 (NYR91_15725) mnhG 3042431..3042805 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  NYR91_RS15730 (NYR91_15730) yuxO 3042844..3043224 (-) 381 WP_014477831.1 hotdog fold thioesterase -
  NYR91_RS15735 (NYR91_15735) comA 3043243..3043887 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  NYR91_RS15740 (NYR91_15740) comP 3043968..3046265 (-) 2298 WP_041519489.1 histidine kinase Regulator
  NYR91_RS15745 (NYR91_15745) comX 3046273..3046434 (-) 162 WP_003241045.1 competence pheromone ComX -
  NYR91_RS15750 (NYR91_15750) - 3046449..3047309 (-) 861 WP_014477833.1 polyprenyl synthetase family protein -
  NYR91_RS15755 (NYR91_15755) degQ 3047494..3047634 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  NYR91_RS15760 (NYR91_15760) - 3047856..3047981 (+) 126 WP_154796978.1 hypothetical protein -
  NYR91_RS15765 (NYR91_15765) - 3048095..3048463 (+) 369 WP_014477834.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=725039 NYR91_RS15735 WP_003220716.1 3043243..3043887(-) (comA) [Bacillus subtilis strain RO-NN-1]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=725039 NYR91_RS15735 WP_003220716.1 3043243..3043887(-) (comA) [Bacillus subtilis strain RO-NN-1]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATCT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTGGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAAGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTGCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCACTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCCTGACATCGATTTTCAATAAGCTGAATGTCGGTTCCCGGACGGAAGCAGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1