Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NYR91_RS08655 Genome accession   NZ_CP103784
Coordinates   1656657..1657550 (+) Length   297 a.a.
NCBI ID   WP_014476797.1    Uniprot ID   -
Organism   Bacillus subtilis strain RO-NN-1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1651657..1662550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR91_RS08635 (NYR91_08635) - 1652327..1654057 (+) 1731 WP_014476795.1 hypothetical protein -
  NYR91_RS08640 (NYR91_08640) ylqH 1654054..1654335 (+) 282 WP_014476796.1 FlhB-like flagellar biosynthesis protein -
  NYR91_RS08645 (NYR91_08645) sucC 1654508..1655665 (+) 1158 WP_003244732.1 ADP-forming succinate--CoA ligase subunit beta -
  NYR91_RS08650 (NYR91_08650) sucD 1655694..1656596 (+) 903 WP_003238566.1 succinate--CoA ligase subunit alpha -
  NYR91_RS08655 (NYR91_08655) dprA 1656657..1657550 (+) 894 WP_014476797.1 DNA-processing protein DprA Machinery gene
  NYR91_RS08660 (NYR91_08660) topA 1657738..1659813 (+) 2076 WP_003245599.1 type I DNA topoisomerase -
  NYR91_RS08665 (NYR91_08665) trmFO 1659889..1661196 (+) 1308 WP_014476799.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NYR91_RS08670 (NYR91_08670) xerC 1661264..1662178 (+) 915 WP_014476800.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32938.22 Da        Isoelectric Point: 9.9142

>NTDB_id=725010 NYR91_RS08655 WP_014476797.1 1656657..1657550(+) (dprA) [Bacillus subtilis strain RO-NN-1]
MDQAAACLTICRINQLLSPSLLLKWWKADPSMSLTSPVLQTVTRDQIKAAALKNEIEQFYPKLQRVLAAYREQGINTIPI
SSKQYPFWLKSIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGKQVVNHLTKEICRKGWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=725010 NYR91_RS08655 WP_014476797.1 1656657..1657550(+) (dprA) [Bacillus subtilis strain RO-NN-1]
TTGGATCAGGCCGCTGCCTGCCTAACGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCCGATCCGTCTATGTCGCTGACATCACCCGTGTTACAAACGGTTACTCGTGATCAAATAAAAGCAGCTGCATTAAAAA
ACGAAATAGAACAATTTTATCCAAAGCTCCAGCGTGTACTTGCTGCTTATCGTGAGCAAGGCATTAACACCATCCCTATT
TCTTCAAAGCAATATCCTTTCTGGCTTAAAAGCATTTATGATCCCCCCGCCGTACTGTTTGCAAAAGGTGATATGACTCT
TCTTTCGAAAGGGAGAAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTATGGGAAACAAGTTGTCAATCATCTTA
CAAAAGAGATCTGTCGTAAAGGTTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATTGGCGTCATTGCAGGCGGATTTCAACACATTTATCCCCGAGAAAACCTTCAGTTAGC
AGATCACATGGCTAAACACCATATCCTGCTGTCAGAGCACCCACCTGAAACTAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATTATCAGCGGACTAAGTGAAGGCGTTATTGTCGTTCAGGGCAAAGAAAAAAGCGGTTCGCTGATTACTGCC
TATCAAGCATTGGAACAAGGGAGAGAGGTATTTGCCGTACCCGGTTCATTGTTTGACCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTTCGAGGAACTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

99.327

100

0.993
  dprA Legionella pneumophila strain ERS1305867

38.462

100

0.387
  dprA Lactococcus lactis subsp. cremoris KW2

42.105

89.562

0.377