Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   M52SOB_RS03510 Genome accession   NZ_AP019373
Coordinates   682791..683582 (+) Length   263 a.a.
NCBI ID   WP_131110595.1    Uniprot ID   -
Organism   Sulfuricystis thermophila strain M52     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 677791..688582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M52SOB_RS03495 - 678824..681130 (+) 2307 WP_131110592.1 EAL domain-containing protein -
  M52SOB_RS03500 pgeF 681125..681853 (-) 729 WP_131110593.1 peptidoglycan editing factor PgeF -
  M52SOB_RS03505 rluD 681843..682766 (-) 924 WP_131110594.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  M52SOB_RS03510 comL 682791..683582 (+) 792 WP_131110595.1 outer membrane protein assembly factor BamD Machinery gene
  M52SOB_RS03515 rlmB 683800..684537 (-) 738 WP_131110596.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  M52SOB_RS03520 - 684530..685438 (-) 909 WP_131110597.1 D-hexose-6-phosphate mutarotase -
  M52SOB_RS03525 - 685441..685887 (-) 447 WP_131110598.1 HEAT repeat domain-containing protein -
  M52SOB_RS03530 rnr 685884..688088 (-) 2205 WP_131110599.1 ribonuclease R -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 29945.14 Da        Isoelectric Point: 7.0495

>NTDB_id=72495 M52SOB_RS03510 WP_131110595.1 682791..683582(+) (comL) [Sulfuricystis thermophila strain M52]
MRSLSLLVLFLLAFSGGCGLLPEQVDETAGWSANKLYAEAKSAMADGAYDKAVKYFEKLEARYPYGRYAQQAQIETAYAY
YKQDEKALALAACDRFIRLHPNHPHVDYVYYLKGLINFNEDLGLLGHVSMQDPSERDPKAAQESFAAFKELVTRFPDSKY
AKDAALRMAYLVNALASHEVHAARYYLKRGAYVAAANRAQYAIKTYPDAPAIEEALFIMVKAYDALGMNDLRDDAERVMK
KNFPDSEYFKRGLDKPEPWWKLW

Nucleotide


Download         Length: 792 bp        

>NTDB_id=72495 M52SOB_RS03510 WP_131110595.1 682791..683582(+) (comL) [Sulfuricystis thermophila strain M52]
ATGCGCAGTTTATCCCTGCTGGTCCTGTTTCTGCTCGCCTTCAGCGGCGGTTGTGGCCTGCTGCCCGAACAGGTCGATGA
GACGGCCGGCTGGTCGGCCAACAAGCTCTACGCCGAGGCAAAGAGCGCGATGGCCGACGGCGCCTATGACAAGGCCGTCA
AGTATTTCGAGAAGCTCGAAGCGCGCTATCCCTATGGCCGCTATGCGCAGCAGGCGCAGATCGAAACCGCCTATGCCTAC
TACAAGCAGGACGAGAAGGCGCTCGCCCTGGCGGCTTGCGACCGCTTCATCCGCCTGCATCCGAACCATCCCCATGTCGA
TTATGTGTATTACCTGAAGGGGCTGATCAATTTCAACGAGGACCTCGGTCTGCTCGGTCATGTCAGCATGCAGGATCCGA
GCGAGCGCGATCCGAAGGCGGCGCAGGAATCCTTTGCGGCGTTCAAGGAGCTGGTCACCCGCTTTCCGGACAGCAAGTAT
GCCAAGGATGCTGCGTTGCGCATGGCATATCTGGTCAATGCGCTCGCCTCGCACGAGGTGCACGCCGCCCGTTACTACCT
GAAACGCGGCGCCTATGTCGCCGCCGCCAACCGCGCCCAGTACGCGATCAAGACCTACCCCGACGCGCCGGCCATCGAGG
AGGCGCTGTTCATCATGGTCAAGGCCTACGATGCGCTCGGCATGAACGATCTGCGCGACGATGCCGAACGCGTGATGAAG
AAGAACTTCCCCGACAGCGAGTATTTCAAGCGCGGGCTCGACAAGCCCGAGCCGTGGTGGAAGCTCTGGTGA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(33-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

49.624

100

0.502
  comL Neisseria gonorrhoeae MS11

48.12

100

0.487

Multiple sequence alignment