Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NYR48_RS08560 Genome accession   NZ_CP103782
Coordinates   1678338..1679237 (+) Length   299 a.a.
NCBI ID   WP_259425500.1    Uniprot ID   -
Organism   Bacillus velezensis strain DA4     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1673338..1684237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR48_RS08540 - 1674028..1675731 (+) 1704 WP_259425499.1 glycosyl transferase -
  NYR48_RS08545 - 1675728..1676009 (+) 282 WP_007409769.1 FlhB-like flagellar biosynthesis protein -
  NYR48_RS08550 sucC 1676184..1677341 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  NYR48_RS08555 sucD 1677370..1678272 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  NYR48_RS08560 dprA 1678338..1679237 (+) 900 WP_259425500.1 DNA-processing protein DprA Machinery gene
  NYR48_RS08565 topA 1679419..1681494 (+) 2076 WP_259425501.1 type I DNA topoisomerase -
  NYR48_RS08570 trmFO 1681559..1682866 (+) 1308 WP_032871468.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NYR48_RS08575 xerC 1682936..1683853 (+) 918 WP_007409774.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32860.00 Da        Isoelectric Point: 8.4593

>NTDB_id=724847 NYR48_RS08560 WP_259425500.1 1678338..1679237(+) (dprA) [Bacillus velezensis strain DA4]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDSHPLTVLSEGKTAPKAIFREIERKDPELDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTLFLEKGRKIGIVGTRKPTEDGIKAAGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=724847 NYR48_RS08560 WP_259425500.1 1678338..1679237(+) (dprA) [Bacillus velezensis strain DA4]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCATTCTCTGTCTTTTTTACCGGATTCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGAAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAATAC
GCTGTTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGCTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGATTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCTCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

69.9

100

0.699
  dprA Legionella pneumophila strain ERS1305867

41.549

94.983

0.395
  dprA Lactococcus lactis subsp. cremoris KW2

40.909

88.294

0.361