Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   NYR48_RS05830 Genome accession   NZ_CP103782
Coordinates   1134849..1135040 (+) Length   63 a.a.
NCBI ID   WP_003155061.1    Uniprot ID   A0AAE2TKK9
Organism   Bacillus velezensis strain DA4     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 1129849..1140040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR48_RS05800 argF 1130701..1131672 (+) 972 WP_012117275.1 ornithine carbamoyltransferase -
  NYR48_RS05805 - 1131748..1131927 (+) 180 WP_003155070.1 YjzC family protein -
  NYR48_RS05810 - 1131964..1132149 (-) 186 WP_007409129.1 YjzD family protein -
  NYR48_RS05815 - 1132410..1133144 (+) 735 WP_012117276.1 hypothetical protein -
  NYR48_RS05820 - 1133227..1133793 (+) 567 WP_259425275.1 hypothetical protein -
  NYR48_RS05825 med 1133883..1134836 (+) 954 WP_007409125.1 BMP family ABC transporter substrate-binding protein Regulator
  NYR48_RS05830 comZ 1134849..1135040 (+) 192 WP_003155061.1 ComZ family protein Regulator
  NYR48_RS05835 - 1135069..1135287 (-) 219 WP_007409123.1 hypothetical protein -
  NYR48_RS05840 - 1135454..1136392 (+) 939 WP_007409122.1 beta-ketoacyl-ACP synthase III -
  NYR48_RS05845 fabF 1136415..1137653 (+) 1239 WP_259425276.1 beta-ketoacyl-ACP synthase II -
  NYR48_RS05850 - 1137736..1138521 (+) 786 WP_259425277.1 DUF2268 domain-containing protein -
  NYR48_RS05855 - 1138695..1139681 (+) 987 WP_259425278.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 63 a.a.        Molecular weight: 7203.33 Da        Isoelectric Point: 4.2259

>NTDB_id=724837 NYR48_RS05830 WP_003155061.1 1134849..1135040(+) (comZ) [Bacillus velezensis strain DA4]
MQHEKSLEFMQIAMKYLPEAKAELEKSGIDLSMEMIQPFMDLFTSVMAEAYELGRSDAGELNK

Nucleotide


Download         Length: 192 bp        

>NTDB_id=724837 NYR48_RS05830 WP_003155061.1 1134849..1135040(+) (comZ) [Bacillus velezensis strain DA4]
ATGCAGCATGAAAAGTCTCTTGAATTTATGCAGATCGCGATGAAATACCTGCCGGAAGCAAAGGCGGAGCTTGAGAAATC
CGGCATAGATCTGTCTATGGAAATGATTCAGCCGTTTATGGACCTGTTTACATCGGTCATGGCGGAAGCGTATGAGCTTG
GCAGATCTGATGCCGGGGAGCTGAATAAATAA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(4-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

86.207

92.063

0.794