Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   NYR48_RS05825 Genome accession   NZ_CP103782
Coordinates   1133883..1134836 (+) Length   317 a.a.
NCBI ID   WP_007409125.1    Uniprot ID   A7Z3B8
Organism   Bacillus velezensis strain DA4     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1128883..1139836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR48_RS05800 argF 1130701..1131672 (+) 972 WP_012117275.1 ornithine carbamoyltransferase -
  NYR48_RS05805 - 1131748..1131927 (+) 180 WP_003155070.1 YjzC family protein -
  NYR48_RS05810 - 1131964..1132149 (-) 186 WP_007409129.1 YjzD family protein -
  NYR48_RS05815 - 1132410..1133144 (+) 735 WP_012117276.1 hypothetical protein -
  NYR48_RS05820 - 1133227..1133793 (+) 567 WP_259425275.1 hypothetical protein -
  NYR48_RS05825 med 1133883..1134836 (+) 954 WP_007409125.1 BMP family ABC transporter substrate-binding protein Regulator
  NYR48_RS05830 comZ 1134849..1135040 (+) 192 WP_003155061.1 ComZ family protein Regulator
  NYR48_RS05835 - 1135069..1135287 (-) 219 WP_007409123.1 hypothetical protein -
  NYR48_RS05840 - 1135454..1136392 (+) 939 WP_007409122.1 beta-ketoacyl-ACP synthase III -
  NYR48_RS05845 fabF 1136415..1137653 (+) 1239 WP_259425276.1 beta-ketoacyl-ACP synthase II -
  NYR48_RS05850 - 1137736..1138521 (+) 786 WP_259425277.1 DUF2268 domain-containing protein -
  NYR48_RS05855 - 1138695..1139681 (+) 987 WP_259425278.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35342.99 Da        Isoelectric Point: 4.6686

>NTDB_id=724836 NYR48_RS05825 WP_007409125.1 1133883..1134836(+) (med) [Bacillus velezensis strain DA4]
MITRLVMIFSVLLLLSGCAQTPFKGKIEKVGMLFPDTISDLVWGTKGYKGLLAIQSEFNVDVYYKENIRSDEDILKAIDD
FHKKGVNLLYGHGNEYEEIFNMISKDYPDMEFVVANGTAKSDNVTSVHLMGEAMGFFGGMTAAHMSKTNEVGVIASFLWQ
PEVDGFIKGAKYEKPDITVNTEFTDHWDNGNEALHLYEKLKAEGTDVVYPAGDGYNVPVIQQIKKDGLYAIGYVAEQSNL
GKNTVLTSTVQNVDKAYTLIAEQYNKGTLKSGDHNFDFREGVVEMGTFSPLVDKAFQDKISDLVKTYNRTNELPSNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=724836 NYR48_RS05825 WP_007409125.1 1133883..1134836(+) (med) [Bacillus velezensis strain DA4]
TTGATCACCAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGCGGATGCGCACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGAATGCTTTTTCCCGATACCATCAGTGACTTGGTATGGGGCACAAAAGGTTACAAAGGTTTATTAGCGA
TACAATCTGAATTTAACGTTGACGTTTATTATAAAGAAAATATCAGATCCGATGAAGATATTTTAAAAGCGATAGATGAT
TTTCATAAAAAAGGAGTCAATCTTTTATACGGGCACGGAAATGAATACGAGGAAATCTTCAATATGATCAGCAAGGATTA
TCCCGACATGGAATTCGTCGTCGCAAACGGAACGGCGAAAAGCGATAATGTCACAAGCGTTCATCTTATGGGAGAAGCAA
TGGGTTTTTTCGGGGGAATGACAGCCGCCCATATGTCAAAAACCAATGAGGTCGGCGTCATCGCCTCCTTTTTGTGGCAG
CCTGAAGTAGACGGCTTTATCAAAGGGGCGAAATATGAAAAGCCTGATATCACCGTCAATACTGAATTTACGGACCACTG
GGATAACGGCAATGAAGCGCTGCATCTTTACGAGAAGTTAAAAGCGGAAGGTACGGATGTTGTATATCCGGCCGGAGACG
GGTATAATGTTCCTGTCATTCAGCAAATCAAAAAAGACGGGCTTTACGCCATCGGCTATGTCGCCGAGCAATCGAATCTC
GGCAAAAACACGGTGCTGACAAGCACGGTGCAAAACGTAGATAAAGCCTATACATTAATTGCCGAGCAATATAATAAAGG
TACGCTCAAGAGCGGAGATCACAACTTTGATTTCAGGGAAGGAGTCGTTGAAATGGGGACGTTCAGCCCTCTGGTGGACA
AAGCATTTCAAGACAAAATCTCAGACCTTGTAAAAACGTATAACCGAACAAATGAACTGCCGTCAAATGAATAG

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z3B8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

78.549

100

0.785