Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NYR47_RS21255 Genome accession   NZ_CP103777
Coordinates   4154297..4156036 (-) Length   579 a.a.
NCBI ID   WP_000947736.1    Uniprot ID   A0AB73RPG8
Organism   Bacillus toyonensis strain DC11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4149297..4161036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR47_RS21235 - 4149593..4151116 (-) 1524 WP_097952990.1 glycosyltransferase family 39 protein -
  NYR47_RS21240 - 4151294..4151593 (-) 300 WP_259417810.1 hypothetical protein -
  NYR47_RS21245 spo0A 4151797..4152591 (-) 795 WP_000411416.1 sporulation transcription factor Spo0A Regulator
  NYR47_RS21250 spoIVB 4152880..4154178 (-) 1299 WP_002048975.1 SpoIVB peptidase -
  NYR47_RS21255 recN 4154297..4156036 (-) 1740 WP_000947736.1 DNA repair protein RecN Machinery gene
  NYR47_RS21260 argR 4156298..4156747 (-) 450 WP_001032581.1 arginine repressor ArgR -
  NYR47_RS21265 - 4156890..4157732 (-) 843 WP_001274740.1 TlyA family RNA methyltransferase -
  NYR47_RS21270 dxs 4157736..4159628 (-) 1893 WP_259416194.1 1-deoxy-D-xylulose-5-phosphate synthase -
  NYR47_RS21275 ispA 4159930..4160820 (-) 891 WP_000150368.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65834.86 Da        Isoelectric Point: 4.7945

>NTDB_id=724797 NYR47_RS21255 WP_000947736.1 4154297..4156036(-) (recN) [Bacillus toyonensis strain DC11]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGERIVKQL
DIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEENELTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEVYQENHDSIANSYYLLEEVAYQLRENLDMMEYDPNRLDEIETRLNEIRMLKRKYGNN
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILKEATLLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNAEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGIASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=724797 NYR47_RS21255 WP_000947736.1 4154297..4156036(-) (recN) [Bacillus toyonensis strain DC11]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGTTTAACAGTTTT
AAGTGGTGAAACAGGAGCTGGAAAATCGATTATTATTGATGCGATTAGTTTACTTGTAGGTGGCCGTGGTTCAGCGGAAT
TTGTTCGATACGGAACAGAAAAAGCTGAGATAGAAGGGTTATTTTATGTGGAAGACGATAAGCATCCATGTATTGAAAAG
GCAGAAGAGTTAGATATAGAAATAGAAGACGGCATGATTATTTTGAAGCGTGATATTGCTGCAAACGGAAAGAGTGTATG
TCGTGTAAATGGGAAACTTGTCACCCTTAGTATATTAAAAGAGATTGGCAAAACGCTTGTTGATATTCATGGACAGCACG
AAACGCAAGACTTAATGAATGAAGAGCGACATCTGTTTATGCTCGATCATTTTGATGGGGAGCGTATTGTTAAACAGTTG
GATATATATCAAAATGTATACGCTGACTATGAGAAATTAAAAAAACAATTGAAATCGTTAAGTGAAAATGAACAACAAAT
GGCACATCGCTTAGATTTAATTCAATTTCAGCATGAAGAAATCCGTAAGGCTGATTTAAAGATGGATGAAGAAAATGAAT
TAACTGAGGAACGATTGCAAATTTCTAATTTTGAAAAGATTTATAAAGCGTTAGGTGATGCATATCGTTCGTTAAGTGCT
GACGGACAAGGATTAGATAATGTAAGAAGTGCAATGGGACAAATGGAGAGTATTACACATTTAGATGAAGTATATCAAGA
AAATCATGATTCAATTGCAAATAGCTATTACTTATTAGAAGAAGTTGCGTATCAACTTAGAGAAAATCTCGATATGATGG
AATATGATCCGAATCGTCTAGATGAAATTGAAACACGTTTAAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATAAT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAGCAAGAAATTTTTACGATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAGCAGTTAAAGGAATTAGAAAGTGTTATTCTGAAAGAAGCAACGTTGTTAAGTAATATGCGTCATGAACTTG
CAGAGCATCTTACAAATGCTATTCATCAAGAATTAAAAGAACTATATATGGAAAAAACGAAATTTGAAGTGAGAATCATG
AAGAGAGAAGGAAATGCAGAAGAACCTCTTGTGGAAGGCGCACCGGTGCGCCTTACGGCGGACGGCTATGATCACGTGGA
GTTTTATATTTCAACGAATCCCGGTGAACCGTTAAAACCACTTTCAAAGGTCGCTTCTGGTGGAGAGTTATCTCGTATTA
TTTTAGCTTTAAAAAGTATTTTTTCTAAACATCAAGGTATTGCATCTGTTATTTTTGATGAAGTGGATACTGGTGTGAGT
GGTCGAGTTGCACAGGCTATTGCGGAAAAAATTTATCGTGTATCAGTAAACTCACAGGTGCTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCGGATTCGCATTTATTTATTCGAAAACAGGTAGCGAATGATCGGACAATTACATCAGTTACCG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTGGAAATTACAGATTTAACGACAGAACAT
GCGAAAGAGTTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.758

100

0.598