Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NYR47_RS07985 Genome accession   NZ_CP103777
Coordinates   1541497..1542099 (-) Length   200 a.a.
NCBI ID   WP_000155587.1    Uniprot ID   -
Organism   Bacillus toyonensis strain DC11     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1536497..1547099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR47_RS07965 dnaD 1536833..1537549 (+) 717 WP_259417146.1 DNA replication protein DnaD -
  NYR47_RS07970 nth 1537565..1538212 (+) 648 WP_259417147.1 endonuclease III -
  NYR47_RS07975 - 1538216..1538734 (+) 519 WP_259417148.1 YpoC family protein -
  NYR47_RS07980 - 1538758..1541430 (-) 2673 WP_259417149.1 PBP1A family penicillin-binding protein -
  NYR47_RS07985 recU 1541497..1542099 (-) 603 WP_000155587.1 Holliday junction resolvase RecU Machinery gene
  NYR47_RS07990 - 1542203..1543228 (+) 1026 WP_259417150.1 DUF2515 domain-containing protein -
  NYR47_RS07995 - 1543658..1543900 (+) 243 WP_001252045.1 hypothetical protein -
  NYR47_RS08000 - 1543916..1544260 (+) 345 WP_259417151.1 YppE family protein -
  NYR47_RS08005 - 1544286..1544477 (-) 192 WP_000242658.1 YppF family protein -
  NYR47_RS08010 - 1544655..1545167 (+) 513 WP_000487698.1 YppG family protein -
  NYR47_RS08015 - 1545325..1545768 (+) 444 WP_259417152.1 spore coat protein -
  NYR47_RS08020 - 1545826..1546380 (+) 555 WP_000869384.1 DUF1273 domain-containing protein -
  NYR47_RS08025 gpsB 1546478..1546813 (+) 336 WP_000622427.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23261.58 Da        Isoelectric Point: 9.6725

>NTDB_id=724786 NYR47_RS07985 WP_000155587.1 1541497..1542099(-) (recU) [Bacillus toyonensis strain DC11]
MTIRYPNGKRYNQASLPPKTPIKKHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIAHNGVAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NNGGRKSITKEEIEAHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=724786 NYR47_RS07985 WP_000155587.1 1541497..1542099(-) (recU) [Bacillus toyonensis strain DC11]
ATGACCATTCGTTACCCAAATGGAAAAAGGTACAATCAAGCTTCACTACCTCCTAAAACACCAATAAAAAAACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATCAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACGGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCGAAGGAAACAAAAAACAA
AACTAGTTTCCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAATTGCTCATAATGGAGTTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTACTCGATGCGAAACATATTATTGCATTTTGGAACCGTCAA
AATAATGGTGGGCGTAAGTCAATTACTAAAGAAGAAATAGAAGCGCATGGATCATTGTTATCATGCGGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63

100

0.63