Detailed information NTG0724778

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: NYR47_RS06055
• Genome accession: NZ_CP103777
• Coordinates: 1181520..1184120 (+)
• Length: 866 a.a.
• NCBI ID: WP_259417024.1
• Uniprot ID: -
• Organism: Bacillus toyonensis strain DC11
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1176520..1189120

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NYR47_RS06015	-	1176630..1177215 (+)	586	Protein_1085	hypothetical protein	-
NYR47_RS06020	prsA	1177284..1178141 (-)	858	WP_259417022.1	peptidylprolyl isomerase PrsA	-
NYR47_RS06025	-	1178271..1178402 (-)	132	WP_001120851.1	DUF3941 domain-containing protein	-
NYR47_RS06030	-	1178503..1179360 (+)	858	WP_000364440.1	YitT family protein	-
NYR47_RS06035	-	1179386..1179583 (-)	198	WP_000527396.1	DUF3813 domain-containing protein	-
NYR47_RS06040	-	1179584..1179724 (-)	141	WP_000516816.1	hypothetical protein	-
NYR47_RS06045	-	1179829..1180638 (-)	810	WP_259417023.1	Cof-type HAD-IIB family hydrolase	-
NYR47_RS06050	-	1181130..1181309 (+)	180	WP_016082481.1	YjzC family protein	-
NYR47_RS06055	clpC	1181520..1184120 (+)	2601	WP_259417024.1	ATP-dependent chaperone ClpB	Regulator
NYR47_RS06060	-	1184157..1184339 (-)	183	WP_259417025.1	YjzD family protein	-
NYR47_RS06065	-	1184496..1185230 (+)	735	WP_000028709.1	hypothetical protein	-
NYR47_RS06070	-	1185260..1186132 (+)	873	WP_000486174.1	NAD(P)-dependent oxidoreductase	-
NYR47_RS06075	comZ	1186197..1186373 (+)	177	WP_001003338.1	ComZ family protein	Regulator
NYR47_RS06080	fabH	1186607..1187539 (+)	933	WP_001100553.1	beta-ketoacyl-ACP synthase III	-
NYR47_RS06085	fabF	1187570..1188808 (+)	1239	WP_000412641.1	beta-ketoacyl-ACP synthase II	-

Sequence

Protein

• Length: 866 a.a.
• Molecular weight: 97448.42 Da
• Isoelectric Point: 5.1927

>NTDB_id=724778 NYR47_RS06055 WP_259417024.1 1181520..1184120(+) (clpC) [Bacillus toyonensis strain DC11]
MDLNQMTTKTQEAIMSAQSLAVSHHHQEVDTVHLLLALLEEQDGLAVRIFQKMNVDIEALKQDVENVIKKKPSVTGSGAE
AGKLYVTSNLQQLLVRAGKEAEKMQDDYISVEHVLLAFSEEKGDINHLFTRLHITKDNLLQSLMTVRGNQRVTSQNPEAT
YEALEKYGRDLVAEVRAGKIDPVIGRDSEIRRVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKKDVPEGLKDRTI
FALDMSALVAGAKFRGEFEERLQAVLNEIKKSEGRILLFIDELHTIVGAGKTEGAMDAGNMLKPMLARGELHCIGATTLD
EYRKYIEKDPALERRFQQVLAEEPTVEDTISILRGLKERFEIYHGVNIHDRAIVAASVLSDRYISDRFLPDKAIDLVDEA
CATIRTEIDSMPTELDEVTRRIMQLEIEEAALGKEKDFGSQERLKTLQRELSDLKEVASSMRAKWEKEKEDIHKVRDLRE
HLERLRRELGEAEGNYDLNKAAELRHGKIPAIEKELKEAEEMGANNKQENRLLREEVSEEEIADIVSRWTGIPVAKLVEG
EREKLLRLEQILSDRVIGQEEAVSLVSDAVLRARAGIKDPNRPIGSFIFLGPTGVGKTELAKTLAQSLFDSEEQMIRIDM
SEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFKNTVI
IMTSNIGSAHLLDGLEADGSIKEESRELVMGQLRGHFRPEFLNRVDEIILFKPLTTNEIKGIVDKIVKELQGRLADRHIT
VELTDSAKEFVVEAGFDPMYGARPLKRYVQRQVETKLARELIAGTITDNSHVVVDVENNELVVHVK

Nucleotide

• Length: 2601 bp

>NTDB_id=724778 NYR47_RS06055 WP_259417024.1 1181520..1184120(+) (clpC) [Bacillus toyonensis strain DC11]
ATGGACTTAAATCAAATGACAACGAAAACACAAGAGGCGATTATGAGTGCCCAATCTTTAGCGGTATCTCATCATCACCA
AGAGGTGGATACTGTTCATCTATTACTTGCATTATTAGAGGAGCAAGATGGATTAGCAGTACGTATATTTCAAAAAATGA
ATGTTGATATAGAAGCATTGAAGCAAGATGTAGAAAATGTAATTAAAAAGAAACCTTCTGTAACGGGAAGCGGAGCAGAA
GCTGGGAAATTGTATGTAACAAGCAATCTGCAGCAACTGCTTGTAAGAGCAGGGAAAGAAGCAGAAAAAATGCAGGATGA
TTACATTTCAGTAGAACATGTATTGCTTGCTTTTTCTGAAGAAAAAGGCGATATCAATCATTTATTTACAAGATTGCATA
TTACGAAAGATAACTTATTACAGTCTTTAATGACAGTTCGGGGGAATCAAAGAGTGACTAGTCAAAATCCAGAAGCAACT
TATGAAGCGTTAGAAAAATATGGCCGTGATTTAGTGGCGGAAGTGAGAGCAGGGAAAATTGATCCTGTTATCGGACGAGA
TAGTGAAATTCGCCGCGTTATTCGCATTCTTTCACGTAAAACGAAAAACAACCCTGTTTTAATTGGTGAGCCAGGTGTTG
GTAAAACAGCAATTGTTGAAGGATTAGCACAGCGTATCGTGAAAAAAGATGTACCAGAAGGGTTAAAAGATAGAACAATC
TTTGCATTAGATATGAGTGCACTTGTAGCCGGAGCAAAATTCCGTGGTGAATTTGAAGAGCGCCTGCAAGCTGTATTAAA
TGAAATTAAAAAGAGTGAAGGCCGTATTTTATTATTCATTGATGAACTTCATACAATCGTCGGTGCTGGTAAAACAGAAG
GTGCGATGGACGCAGGGAATATGTTAAAACCGATGCTTGCTCGTGGTGAACTGCATTGTATCGGGGCAACGACATTAGAT
GAATATCGTAAATATATTGAGAAAGACCCAGCGTTAGAAAGACGTTTCCAACAAGTATTAGCAGAGGAACCGACTGTTGA
AGATACAATTTCCATTTTACGTGGTTTAAAAGAGCGTTTTGAAATTTATCACGGTGTAAATATTCATGACCGCGCGATTG
TAGCAGCATCTGTTTTATCAGATCGATATATTTCAGATCGCTTCTTACCGGATAAAGCAATTGACCTTGTTGACGAAGCA
TGCGCAACAATTCGTACAGAAATTGATTCTATGCCAACAGAATTAGATGAAGTAACGCGCCGTATTATGCAGCTGGAAAT
TGAAGAAGCCGCTCTTGGAAAAGAGAAGGACTTTGGTAGCCAAGAACGTCTAAAAACATTGCAACGTGAATTATCGGATT
TAAAAGAAGTTGCAAGTAGCATGAGAGCGAAATGGGAGAAAGAAAAAGAAGATATTCACAAAGTTCGTGACTTACGTGAA
CATTTAGAGCGTCTGCGCCGTGAATTAGGAGAAGCAGAAGGTAATTACGATTTAAATAAAGCAGCTGAACTTCGTCACGG
AAAAATTCCTGCAATTGAAAAAGAGTTAAAAGAAGCAGAAGAAATGGGCGCGAATAATAAACAAGAAAACCGTTTATTAC
GTGAGGAAGTAAGTGAAGAAGAGATTGCTGATATTGTTTCACGCTGGACTGGCATTCCTGTCGCAAAACTCGTTGAAGGT
GAACGTGAGAAATTATTACGATTAGAGCAAATTTTATCAGATCGTGTCATCGGACAAGAGGAAGCGGTAAGCTTAGTATC
AGATGCAGTTCTTCGTGCGCGGGCTGGTATTAAAGACCCGAATCGCCCGATTGGTTCTTTCATTTTCCTAGGACCAACTG
GTGTTGGTAAAACAGAACTTGCAAAAACGTTAGCACAGTCTTTATTCGATAGTGAAGAGCAAATGATTCGTATCGATATG
TCTGAGTACATGGAGAAACATGCTGTGTCACGCTTAATTGGTGCACCTCCTGGATATGTTGGATATGAAGAGGGCGGTCA
ATTAACGGAAGCAGTAAGACGTAAACCGTATTCCGTTATTTTGTTAGACGAAATCGAAAAAGCGCATCCAGAAGTATTCA
ACATTTTATTACAAATGTTAGATGATGGACGCATTACAGATTCGCAAGGACGTACAGTAGACTTTAAAAACACGGTTATT
ATTATGACTTCAAATATTGGATCTGCTCATTTATTAGATGGATTAGAAGCAGATGGTTCCATTAAAGAGGAATCAAGAGA
ACTTGTCATGGGACAATTAAGAGGACATTTCCGACCAGAGTTTTTAAATCGTGTCGATGAAATTATTTTATTCAAGCCTC
TTACAACGAATGAAATTAAAGGTATTGTTGATAAAATTGTAAAAGAATTACAAGGTCGTTTAGCTGACCGTCATATTACG
GTAGAATTAACGGATTCTGCAAAAGAATTTGTTGTAGAAGCTGGCTTTGATCCGATGTACGGAGCTCGTCCATTAAAACG
ATACGTACAGCGTCAAGTGGAAACGAAATTAGCGAGAGAATTAATTGCAGGCACAATTACGGATAATAGTCACGTAGTTG
TTGATGTAGAAAATAACGAATTAGTTGTTCATGTGAAATGA

Domains

Predicted by InterproScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (774-854)

• AAA lid domain (AAA_lid_9) (345-447)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (97-148)

• AAA domain (Cdc48 subfamily) (AAA_2) (602-768)

• ATPase family associated with various cellular activities (AAA) (AAA) (206-339)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	47.657	100	0.482
clpC	Lactococcus lactis subsp. cremoris KW2	46.704	82.333	0.385
clpC	Streptococcus thermophilus LMD-9	43.593	82.91	0.361