Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | GSP_RS05950 | Genome accession | NZ_AP019372 |
| Coordinates | 1270600..1271574 (+) | Length | 324 a.a. |
| NCBI ID | WP_014613820.1 | Uniprot ID | - |
| Organism | Staphylococcus pseudintermedius strain SP79 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1265600..1276574
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GSP_RS05915 (GSP_11520) | rpmG | 1265985..1266149 (+) | 165 | WP_256726578.1 | 50S ribosomal protein L33 | - |
| GSP_RS05920 (GSP_11530) | - | 1266301..1266840 (+) | 540 | WP_014613814.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| GSP_RS05925 (GSP_11540) | - | 1266859..1268298 (+) | 1440 | WP_100007251.1 | rhomboid family intramembrane serine protease | - |
| GSP_RS05930 (GSP_11550) | - | 1268300..1268503 (+) | 204 | WP_014613816.1 | YqgQ family protein | - |
| GSP_RS05935 (GSP_11560) | - | 1268500..1269486 (+) | 987 | WP_127505088.1 | ROK family glucokinase | - |
| GSP_RS05940 (GSP_11570) | - | 1269487..1269798 (+) | 312 | WP_014613818.1 | MTH1187 family thiamine-binding protein | - |
| GSP_RS05945 (GSP_11580) | - | 1269811..1270440 (+) | 630 | WP_037542865.1 | MBL fold metallo-hydrolase | - |
| GSP_RS05950 (GSP_11590) | comGA | 1270600..1271574 (+) | 975 | WP_014613820.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| GSP_RS05955 (GSP_11600) | comGB | 1271543..1272610 (+) | 1068 | WP_014613821.1 | competence type IV pilus assembly protein ComGB | - |
| GSP_RS05960 (GSP_11610) | comGC | 1272623..1272946 (+) | 324 | WP_015729165.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| GSP_RS05965 (GSP_11620) | comGD | 1272924..1273364 (+) | 441 | WP_014613823.1 | competence type IV pilus minor pilin ComGD | - |
| GSP_RS05970 (GSP_11630) | - | 1273469..1273669 (+) | 201 | WP_020219623.1 | hypothetical protein | - |
| GSP_RS05975 (GSP_11640) | - | 1273575..1274060 (+) | 486 | WP_080552896.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| GSP_RS05980 (GSP_11660) | - | 1274224..1274751 (+) | 528 | WP_014613826.1 | shikimate kinase | - |
| GSP_RS05985 (GSP_11670) | gcvT | 1274909..1276000 (+) | 1092 | WP_015729161.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 36846.58 Da Isoelectric Point: 7.5584
>NTDB_id=72477 GSP_RS05950 WP_014613820.1 1270600..1271574(+) (comGA) [Staphylococcus pseudintermedius strain SP79]
MQLLLDHVIQFALQNEASDIHFIPSQSQVEVKLRVKDQLVLYDTLNLETYQKLLTLLKYQAGLDISTRHKAQSGRYIYEH
KALYYLRVSTLPLNLGTESCVIRITPQYFQNAKAHSVLDIKSNMEKKQGLILFSGPTGAGKSTLMYQMVVYAKQKLNLNI
ITIEDPVEQLVNGITQISVNEKADITYGSSLKAILRCDPDVILIGEIRDSHIARDVIQASLSGHLVLSTIHANDCQGVLL
RLIEMGLSHQDLSQSINLIINQRLITTKNDQRQLVYETMDQQEIHYFLNNNFQLPTAFTSLSHKLQLLNKEGVIDEKILR
KYTI
MQLLLDHVIQFALQNEASDIHFIPSQSQVEVKLRVKDQLVLYDTLNLETYQKLLTLLKYQAGLDISTRHKAQSGRYIYEH
KALYYLRVSTLPLNLGTESCVIRITPQYFQNAKAHSVLDIKSNMEKKQGLILFSGPTGAGKSTLMYQMVVYAKQKLNLNI
ITIEDPVEQLVNGITQISVNEKADITYGSSLKAILRCDPDVILIGEIRDSHIARDVIQASLSGHLVLSTIHANDCQGVLL
RLIEMGLSHQDLSQSINLIINQRLITTKNDQRQLVYETMDQQEIHYFLNNNFQLPTAFTSLSHKLQLLNKEGVIDEKILR
KYTI
Nucleotide
Download Length: 975 bp
>NTDB_id=72477 GSP_RS05950 WP_014613820.1 1270600..1271574(+) (comGA) [Staphylococcus pseudintermedius strain SP79]
ATGCAACTACTATTAGATCATGTAATACAATTTGCACTTCAAAATGAGGCGTCAGACATTCATTTTATCCCATCACAATC
ACAAGTTGAAGTGAAACTCAGAGTGAAAGATCAACTTGTATTATATGACACATTAAATCTAGAAACGTATCAAAAATTGT
TAACTTTGTTGAAATACCAAGCTGGATTAGATATTTCGACACGCCACAAAGCGCAAAGTGGGCGCTATATTTATGAACAT
AAAGCGTTATATTATTTAAGAGTGTCCACGTTACCTTTAAACTTAGGTACTGAAAGTTGTGTTATTCGTATTACACCCCA
ATATTTTCAAAATGCGAAAGCTCATAGTGTATTAGACATCAAATCTAATATGGAGAAAAAGCAAGGTTTAATTCTGTTTA
GCGGGCCTACAGGTGCAGGAAAGAGCACGTTAATGTATCAAATGGTCGTCTATGCTAAACAAAAGTTAAACCTGAATATT
ATCACAATAGAAGACCCGGTCGAGCAGCTTGTGAACGGCATTACGCAAATTTCCGTTAACGAAAAAGCTGATATTACGTA
TGGATCGTCGTTAAAAGCAATTCTTCGTTGTGATCCAGATGTCATCTTAATTGGTGAGATTCGTGACAGTCATATTGCAA
GGGACGTTATACAAGCGAGTTTAAGTGGGCATTTAGTATTGTCGACGATACACGCCAATGATTGTCAAGGGGTGCTCCTT
AGACTGATTGAAATGGGACTCTCTCACCAAGATTTATCTCAATCTATCAATCTCATCATCAATCAAAGACTCATTACAAC
AAAAAACGACCAGCGACAACTCGTCTATGAAACGATGGATCAACAGGAGATTCATTACTTTTTGAATAATAACTTCCAAC
TACCTACTGCTTTCACAAGCCTTTCTCATAAGCTTCAACTTCTGAATAAAGAGGGGGTTATAGATGAAAAGATTTTACGA
AAGTATACGATTTAA
ATGCAACTACTATTAGATCATGTAATACAATTTGCACTTCAAAATGAGGCGTCAGACATTCATTTTATCCCATCACAATC
ACAAGTTGAAGTGAAACTCAGAGTGAAAGATCAACTTGTATTATATGACACATTAAATCTAGAAACGTATCAAAAATTGT
TAACTTTGTTGAAATACCAAGCTGGATTAGATATTTCGACACGCCACAAAGCGCAAAGTGGGCGCTATATTTATGAACAT
AAAGCGTTATATTATTTAAGAGTGTCCACGTTACCTTTAAACTTAGGTACTGAAAGTTGTGTTATTCGTATTACACCCCA
ATATTTTCAAAATGCGAAAGCTCATAGTGTATTAGACATCAAATCTAATATGGAGAAAAAGCAAGGTTTAATTCTGTTTA
GCGGGCCTACAGGTGCAGGAAAGAGCACGTTAATGTATCAAATGGTCGTCTATGCTAAACAAAAGTTAAACCTGAATATT
ATCACAATAGAAGACCCGGTCGAGCAGCTTGTGAACGGCATTACGCAAATTTCCGTTAACGAAAAAGCTGATATTACGTA
TGGATCGTCGTTAAAAGCAATTCTTCGTTGTGATCCAGATGTCATCTTAATTGGTGAGATTCGTGACAGTCATATTGCAA
GGGACGTTATACAAGCGAGTTTAAGTGGGCATTTAGTATTGTCGACGATACACGCCAATGATTGTCAAGGGGTGCTCCTT
AGACTGATTGAAATGGGACTCTCTCACCAAGATTTATCTCAATCTATCAATCTCATCATCAATCAAAGACTCATTACAAC
AAAAAACGACCAGCGACAACTCGTCTATGAAACGATGGATCAACAGGAGATTCATTACTTTTTGAATAATAACTTCCAAC
TACCTACTGCTTTCACAAGCCTTTCTCATAAGCTTCAACTTCTGAATAAAGAGGGGGTTATAGATGAAAAGATTTTACGA
AAGTATACGATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
58.514 |
99.691 |
0.583 |
| comGA | Staphylococcus aureus N315 |
58.514 |
99.691 |
0.583 |