Detailed information NTG0724736

Bioinformatically predicted

Overview

• Name: degS
• Type: Regulator
• Locus tag: NYO93_RS16775
• Genome accession: NZ_CP103770
• Coordinates: 3395220..3396383 (-)
• Length: 387 a.a.
• NCBI ID: WP_007407484.1
• Uniprot ID: A3KLC1
• Organism: Bacillus velezensis strain TH-1
• Function: phosphorylation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3390220..3401383

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NYO93_RS16745 (NYO93_16745)	-	3390484..3390903 (-)	420	WP_012118571.1	TIGR03826 family flagellar region protein	-
NYO93_RS16750 (NYO93_16750)	comFC	3390977..3391666 (-)	690	WP_196770545.1	phosphoribosyltransferase family protein	Machinery gene
NYO93_RS16755 (NYO93_16755)	-	3391672..3391956 (-)	285	WP_003151389.1	late competence development ComFB family protein	-
NYO93_RS16760 (NYO93_16760)	comFA	3392014..3393399 (-)	1386	WP_032876163.1	DEAD/DEAH box helicase	Machinery gene
NYO93_RS16765 (NYO93_16765)	-	3393508..3394356 (-)	849	WP_032876160.1	DegV family protein	-
NYO93_RS16770 (NYO93_16770)	degU	3394454..3395143 (-)	690	WP_003219701.1	two-component system response regulator DegU	Regulator
NYO93_RS16775 (NYO93_16775)	degS	3395220..3396383 (-)	1164	WP_007407484.1	two-component sensor histidine kinase DegS	Regulator
NYO93_RS16780 (NYO93_16780)	-	3396606..3397253 (+)	648	WP_007614107.1	YigZ family protein	-
NYO93_RS16785 (NYO93_16785)	-	3397258..3398439 (+)	1182	WP_032876157.1	LCP family protein	-
NYO93_RS16790 (NYO93_16790)	-	3398538..3399614 (-)	1077	WP_003151382.1	glycosyltransferase family 4 protein	-
NYO93_RS16795 (NYO93_16795)	-	3399747..3400943 (-)	1197	WP_032876154.1	glycosyltransferase	-

Sequence

Protein

• Length: 387 a.a.
• Molecular weight: 45014.78 Da
• Isoelectric Point: 6.8616

>NTDB_id=724736 NYO93_RS16775 WP_007407484.1 3395220..3396383(-) (degS) [Bacillus velezensis strain TH-1]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENQRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide

• Length: 1164 bp

>NTDB_id=724736 NYO93_RS16775 WP_007407484.1 3395220..3396383(-) (degS) [Bacillus velezensis strain TH-1]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTTGAAGAACTCAAACAGATCAAACAGCAGG
TGTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAGCAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATTATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAAATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTACGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGCATCGGAGACACAGAGAACCAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTCATCATTAAGGACAATGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (291-384)

• Sensor protein DegS (DegS) (12-170)

• Histidine kinase (HisKA_3) (180-248)

3D structure

• AlphaFold DB: A3KLC1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
degS	Bacillus subtilis subsp. subtilis str. 168	95.584	99.483	0.951