Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   NYO93_RS11480 Genome accession   NZ_CP103770
Coordinates   2401780..2402580 (-) Length   266 a.a.
NCBI ID   WP_003153177.1    Uniprot ID   I2C7K5
Organism   Bacillus velezensis strain TH-1     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2396780..2407580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYO93_RS11450 (NYO93_11450) - 2397318..2397950 (+) 633 WP_014418348.1 helix-turn-helix domain-containing protein -
  NYO93_RS11455 (NYO93_11455) - 2398247..2398384 (+) 138 WP_014470646.1 hypothetical protein -
  NYO93_RS11460 (NYO93_11460) - 2398478..2399596 (+) 1119 WP_032874152.1 NADH-dependent flavin oxidoreductase -
  NYO93_RS11465 (NYO93_11465) - 2399723..2399935 (+) 213 WP_007408362.1 spore germination protein -
  NYO93_RS11470 (NYO93_11470) - 2400061..2400273 (+) 213 WP_014418351.1 spore germination protein -
  NYO93_RS11475 (NYO93_11475) alr 2400450..2401631 (+) 1182 WP_025649856.1 alanine racemase -
  NYO93_RS11480 (NYO93_11480) spo0A 2401780..2402580 (-) 801 WP_003153177.1 sporulation transcription factor Spo0A Regulator
  NYO93_RS11485 (NYO93_11485) spoIVB 2402861..2404141 (-) 1281 WP_007408360.1 SpoIVB peptidase -
  NYO93_RS11490 (NYO93_11490) recN 2404305..2406035 (-) 1731 WP_032874060.1 DNA repair protein RecN Machinery gene
  NYO93_RS11495 (NYO93_11495) ahrC 2406067..2406516 (-) 450 WP_003153173.1 transcriptional regulator AhrC/ArgR -
  NYO93_RS11500 (NYO93_11500) - 2406613..2407458 (-) 846 WP_007612503.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29630.11 Da        Isoelectric Point: 6.1630

>NTDB_id=724706 NYO93_RS11480 WP_003153177.1 2401780..2402580(-) (spo0A) [Bacillus velezensis strain TH-1]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELEKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRSQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=724706 NYO93_RS11480 WP_003153177.1 2401780..2402580(-) (spo0A) [Bacillus velezensis strain TH-1]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGTCTTTCGTTGTTTAAAGATAAGAATCCCGATGTGCTCG
TTTTAGACATTATCATGCCGCATCTGGACGGACTTGCGGTTTTGGAGCGTCTGCGGGAATCAGAGCTCGAGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCGTCCTATTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGAAATGTCAGCAGTGTCACACACCGTGCGC
CGTCCGCGCAAAGCAGCATTATCCGCAGCCAGCCGGAGCCAAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGACATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATTGCCAAAAAATTCAACACGACCGCAAGCCGTGTAGAACGGG
CCATCCGCCACGCCATTGAAGTCGCATGGAGCAGGGGAAATATTGATTCCATTTCTTCACTGTTCGGATATACGGTAAGC
ATGACAAAAGCAAAACCAACCAACTCGGAATTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C7K5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.97