Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   GSP_RS03745 Genome accession   NZ_AP019372
Coordinates   838005..838721 (-) Length   238 a.a.
NCBI ID   WP_014613411.1    Uniprot ID   X2JA42
Organism   Staphylococcus pseudintermedius strain SP79     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 833005..843721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSP_RS03725 - 834058..834172 (-) 115 Protein_719 ribose transporter RbsU -
  GSP_RS03730 (GSP_07400) - 834510..835457 (+) 948 WP_099997326.1 LacI family DNA-binding transcriptional regulator -
  GSP_RS03735 (GSP_07410) - 835513..836997 (+) 1485 WP_063278588.1 sucrose-6-phosphate hydrolase -
  GSP_RS03740 (GSP_07420) - 837001..837945 (+) 945 WP_126510893.1 carbohydrate kinase -
  GSP_RS03745 (GSP_07430) agrA 838005..838721 (-) 717 WP_014613411.1 LytTR family DNA-binding domain-containing protein Regulator
  GSP_RS03750 (GSP_07440) - 838735..839790 (-) 1056 WP_225550110.1 GHKL domain-containing protein -
  GSP_RS03755 (GSP_07450) - 840050..840187 (-) 138 WP_019166405.1 cyclic lactone autoinducer peptide -
  GSP_RS03760 (GSP_07460) - 840189..840755 (-) 567 WP_127505027.1 accessory gene regulator AgrB -
  GSP_RS03770 (GSP_07470) - 841512..842315 (-) 804 WP_014613416.1 carbon-nitrogen family hydrolase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 28002.15 Da        Isoelectric Point: 5.4331

>NTDB_id=72466 GSP_RS03745 WP_014613411.1 838005..838721(-) (agrA) [Staphylococcus pseudintermedius strain SP79]
MKILICEDDPKQRERMVSIIENYIMIEEKPMKIELATNDPYAILETSKNMTDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPEELRTRIIDCLETALKRLDLLTKDHTVETLELKRGTSSVYVNYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLKELAQLDDRFFRCHNSYVLNRRNITSVDTKERIAYFKNEEFCYVSVRNLKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=72466 GSP_RS03745 WP_014613411.1 838005..838721(-) (agrA) [Staphylococcus pseudintermedius strain SP79]
ATGAAAATTTTGATTTGTGAGGATGATCCTAAACAACGCGAACGTATGGTGTCCATTATTGAAAACTATATTATGATTGA
AGAGAAGCCGATGAAAATTGAGCTTGCTACCAATGACCCTTATGCTATCTTAGAAACTTCTAAAAACATGACTGATATTG
GCTGCTACTTTTTAGATATTCAATTAGAGTCTGATATTAACGGGATTAAATTAGGGAGCGAAATTCGTAAGCACGATCCT
GTTGGGAATATTATTTTTGTGACGAGTCATAGTGAGCTGACGTACTTGACTTTTGTCTATAAAGTGGCTGCCATGGATTT
TATTTTTAAAGATGATCCTGAAGAATTAAGGACACGCATTATCGATTGTTTAGAAACAGCATTAAAACGGCTTGATTTAT
TAACAAAAGATCATACTGTTGAAACTTTGGAACTCAAACGTGGAACCAGCTCGGTTTACGTGAACTATGACGACGTGATG
TTTTTCGAGTCCTCACCGAAGTCACATCGTTTAATCGCGCATTTAGACAATCGTCAAATCGAATTTTACGGCAATTTGAA
AGAGTTAGCTCAACTCGATGATCGATTCTTCAGATGCCACAACAGTTATGTGCTAAACAGAAGAAATATTACAAGTGTCG
ATACGAAAGAACGGATTGCTTATTTCAAAAATGAAGAATTTTGTTACGTGTCGGTGCGTAATTTGAAGAAAATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(152-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB X2JA42

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

83.193

100

0.832

Multiple sequence alignment