Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   NYR93_RS09385 Genome accession   NZ_CP103769
Coordinates   1971862..1972815 (-) Length   317 a.a.
NCBI ID   WP_003155063.1    Uniprot ID   -
Organism   Bacillus velezensis strain ML61     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1966862..1977815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR93_RS09355 (NYR93_09355) - 1967014..1968000 (-) 987 WP_014304782.1 ABC transporter ATP-binding protein -
  NYR93_RS09360 (NYR93_09360) - 1968174..1968959 (-) 786 WP_264255064.1 DUF2268 domain-containing protein -
  NYR93_RS09365 (NYR93_09365) fabF 1969043..1970281 (-) 1239 WP_264255065.1 beta-ketoacyl-ACP synthase II -
  NYR93_RS09370 (NYR93_09370) - 1970304..1971242 (-) 939 WP_003155057.1 beta-ketoacyl-ACP synthase III -
  NYR93_RS09375 (NYR93_09375) - 1971410..1971628 (+) 219 WP_003155059.1 hypothetical protein -
  NYR93_RS09380 (NYR93_09380) comZ 1971658..1971849 (-) 192 WP_003155061.1 ComZ family protein Regulator
  NYR93_RS09385 (NYR93_09385) med 1971862..1972815 (-) 954 WP_003155063.1 BMP family ABC transporter substrate-binding protein Regulator
  NYR93_RS09390 (NYR93_09390) - 1972905..1973471 (-) 567 WP_264255066.1 hypothetical protein -
  NYR93_RS09395 (NYR93_09395) - 1973554..1974288 (-) 735 WP_264255067.1 alpha/beta hydrolase -
  NYR93_RS09400 (NYR93_09400) - 1974549..1974734 (+) 186 WP_003155069.1 YjzD family protein -
  NYR93_RS09405 (NYR93_09405) - 1974771..1974950 (-) 180 WP_003155070.1 YjzC family protein -
  NYR93_RS09410 (NYR93_09410) argF 1975026..1975997 (-) 972 WP_264255068.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35345.94 Da        Isoelectric Point: 4.5594

>NTDB_id=724634 NYR93_RS09385 WP_003155063.1 1971862..1972815(-) (med) [Bacillus velezensis strain ML61]
MITRLVMIFSVLLLLSGCTQTPFKGKIEKVGMLFPDTISDLVWGTKGYKGLLAIQSEFNVDVYYKENIRSDEDILKAIDD
FHKKGVNLLYGHGNEYEEIFNMISKDYPDMEFVVANGTAKSDNVTSVHLMGEAMGFFGGMTAAHMSKTNEVGVIASFLWQ
PEVDGFIKGAKYEKPDITVNTEFTDHWDNGNEALHLYEKLKAEGTDVVYPAGDGYNVPVIQQIKKDGLYAIGYVAEQSNL
GKNTVLTSTVQNVDKAYTLIAEQYNKGTLKSGDHDFDFREGVVEMGTFSPLVDKAFQDKISDLVKTYNQTNELPSNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=724634 NYR93_RS09385 WP_003155063.1 1971862..1972815(-) (med) [Bacillus velezensis strain ML61]
TTGATCACCAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGCGGATGCACACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGAATGCTTTTCCCCGATACCATCAGTGACTTGGTATGGGGCACAAAAGGTTACAAAGGTTTATTAGCGA
TACAATCTGAATTTAACGTTGACGTTTATTATAAAGAAAATATCAGATCCGATGAAGATATTTTAAAAGCGATAGATGAT
TTTCATAAAAAAGGAGTCAATCTTTTATACGGGCACGGAAATGAATACGAGGAAATCTTCAATATGATCAGCAAGGATTA
TCCCGACATGGAATTCGTCGTCGCAAACGGAACGGCGAAAAGCGATAATGTCACAAGCGTTCACCTTATGGGAGAAGCAA
TGGGTTTTTTCGGGGGAATGACGGCCGCCCATATGTCAAAAACCAATGAGGTCGGTGTCATCGCCTCTTTTCTGTGGCAG
CCTGAAGTAGACGGCTTTATCAAAGGGGCGAAATATGAAAAGCCTGATATCACCGTCAATACTGAATTTACGGACCACTG
GGATAACGGCAATGAAGCGCTCCATCTTTACGAGAAGTTAAAAGCGGAAGGCACGGATGTTGTATATCCGGCCGGAGACG
GGTATAATGTTCCTGTCATTCAGCAAATCAAAAAAGACGGGCTTTACGCCATCGGCTATGTCGCCGAGCAATCGAATCTC
GGCAAAAACACGGTGCTGACAAGCACGGTGCAAAACGTAGATAAAGCCTATACATTAATTGCCGAGCAATATAATAAAGG
TACGCTCAAGAGCGGAGATCACGACTTTGATTTCAGGGAAGGAGTCGTTGAAATGGGGACGTTCAGCCCGCTGGTGGACA
AAGCGTTTCAAGACAAAATCTCAGACCTTGTCAAAACGTATAATCAAACAAATGAACTGCCGTCAAATGAATAG

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

78.549

100

0.785