Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   PY721_RS09355 Genome accession   NZ_CP119008
Coordinates   1945501..1946238 (+) Length   245 a.a.
NCBI ID   WP_301221519.1    Uniprot ID   -
Organism   Escherichia coli strain CE0011b     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1940501..1951238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY721_RS09340 (PY721_09340) clpC 1940955..1943528 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  PY721_RS09345 (PY721_09345) yfiH 1943658..1944389 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  PY721_RS09350 (PY721_09350) rluD 1944386..1945366 (-) 981 WP_000079099.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PY721_RS09355 (PY721_09355) comL 1945501..1946238 (+) 738 WP_301221519.1 outer membrane protein assembly factor BamD Machinery gene
  PY721_RS09360 (PY721_09360) raiA 1946509..1946850 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  PY721_RS09365 (PY721_09365) pheL 1946954..1947001 (+) 48 WP_010723158.1 phe operon leader peptide -
  PY721_RS09370 (PY721_09370) pheA 1947100..1948260 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  PY721_RS09375 (PY721_09375) tyrA 1948303..1949424 (-) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  PY721_RS09380 (PY721_09380) aroF 1949435..1950505 (-) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  PY721_RS09385 (PY721_09385) yfiL 1950715..1951080 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27857.45 Da        Isoelectric Point: 6.4874

>NTDB_id=724628 PY721_RS09355 WP_301221519.1 1945501..1946238(+) (comL) [Escherichia coli strain CE0011b]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARVAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=724628 PY721_RS09355 WP_301221519.1 1945501..1946238(+) (comL) [Escherichia coli strain CE0011b]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGTTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376