Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   PY722_RS23975 Genome accession   NZ_CP119006
Coordinates   4815779..4816516 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain CE0021a     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4810779..4821516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY722_RS23960 (PY722_23960) clpC 4811233..4813806 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  PY722_RS23965 (PY722_23965) yfiH 4813936..4814667 (-) 732 WP_000040129.1 purine nucleoside phosphorylase YfiH -
  PY722_RS23970 (PY722_23970) rluD 4814664..4815644 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PY722_RS23975 (PY722_23975) comL 4815779..4816516 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  PY722_RS23980 (PY722_23980) raiA 4816787..4817128 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  PY722_RS23985 (PY722_23985) pheL 4817232..4817279 (+) 48 WP_001700969.1 pheA operon leader peptide PheL -
  PY722_RS23990 (PY722_23990) pheA 4817378..4818538 (+) 1161 WP_000200101.1 bifunctional chorismate mutase/prephenate dehydratase -
  PY722_RS23995 (PY722_23995) tyrA 4818581..4819702 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  PY722_RS24000 (PY722_24000) aroF 4819713..4820783 (-) 1071 WP_112032168.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  PY722_RS24005 (PY722_24005) yfiL 4820993..4821358 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=724596 PY722_RS23975 WP_000197686.1 4815779..4816516(+) (comL) [Escherichia coli strain CE0021a]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=724596 PY722_RS23975 WP_000197686.1 4815779..4816516(+) (comL) [Escherichia coli strain CE0021a]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376