Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NYO14_RS16175 Genome accession   NZ_CP103755
Coordinates   3217309..3217938 (-) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   A0A066SWI0
Organism   Escherichia coli strain p11B     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3212309..3222938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYO14_RS16160 (NYO14_16160) helD 3212551..3214605 (-) 2055 WP_001295938.1 DNA helicase IV -
  NYO14_RS16165 (NYO14_16165) yccF 3214728..3215174 (+) 447 WP_001261235.1 YccF domain-containing protein -
  NYO14_RS16170 (NYO14_16170) yccS 3215184..3217346 (+) 2163 WP_000875041.1 YccS family putative transporter -
  NYO14_RS16175 (NYO14_16175) sxy/tfoX 3217309..3217938 (-) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NYO14_RS16180 (NYO14_16180) sulA 3218157..3218666 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  NYO14_RS16185 (NYO14_16185) ompA 3219022..3220074 (+) 1053 WP_001346420.1 porin OmpA -
  NYO14_RS16190 (NYO14_16190) matP 3220150..3220602 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  NYO14_RS16195 (NYO14_16195) ycbZ 3220788..3222548 (+) 1761 WP_000156502.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=724523 NYO14_RS16175 WP_000839151.1 3217309..3217938(-) (sxy/tfoX) [Escherichia coli strain p11B]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=724523 NYO14_RS16175 WP_000839151.1 3217309..3217938(-) (sxy/tfoX) [Escherichia coli strain p11B]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A066SWI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995