Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   PY719_RS08680 Genome accession   NZ_CP119003
Coordinates   1788675..1789412 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain CE0026a     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1783675..1794412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY719_RS08650 (PY719_08650) yfiL 1783833..1784198 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  PY719_RS08655 (PY719_08655) aroF 1784408..1785478 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  PY719_RS08660 (PY719_08660) tyrA 1785489..1786610 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  PY719_RS08665 (PY719_08665) pheA 1786653..1787813 (-) 1161 WP_000200101.1 bifunctional chorismate mutase/prephenate dehydratase -
  PY719_RS08670 (PY719_08670) pheL 1787912..1787959 (-) 48 WP_001700969.1 pheA operon leader peptide PheL -
  PY719_RS08675 (PY719_08675) raiA 1788063..1788404 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  PY719_RS08680 (PY719_08680) comL 1788675..1789412 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  PY719_RS08685 (PY719_08685) rluD 1789547..1790527 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PY719_RS08690 (PY719_08690) yfiH 1790524..1791255 (+) 732 WP_000040129.1 purine nucleoside phosphorylase YfiH -
  PY719_RS08695 (PY719_08695) clpC 1791385..1793958 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=724481 PY719_RS08680 WP_000197686.1 1788675..1789412(-) (comL) [Escherichia coli strain CE0026a]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=724481 PY719_RS08680 WP_000197686.1 1788675..1789412(-) (comL) [Escherichia coli strain CE0026a]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376