Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   KU43P_RS19620 Genome accession   NZ_AP019365
Coordinates   4295673..4297901 (-) Length   742 a.a.
NCBI ID   WP_317659111.1    Uniprot ID   -
Organism   Pseudomonas sp. KU43P     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4290673..4302901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU43P_RS19585 (KU43P_38630) murB 4291061..4292080 (-) 1020 WP_317659105.1 UDP-N-acetylmuramate dehydrogenase -
  KU43P_RS19590 (KU43P_38640) - 4292077..4292541 (-) 465 WP_317659106.1 low molecular weight protein-tyrosine-phosphatase -
  KU43P_RS19595 (KU43P_38650) kdsB 4292541..4293305 (-) 765 WP_317659107.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KU43P_RS19600 (KU43P_38660) - 4293302..4293487 (-) 186 WP_003247142.1 Trm112 family protein -
  KU43P_RS19605 (KU43P_38670) lpxK 4293531..4294538 (-) 1008 WP_317659108.1 tetraacyldisaccharide 4'-kinase -
  KU43P_RS19610 (KU43P_38680) - 4294538..4294972 (-) 435 WP_317659109.1 ExbD/TolR family protein -
  KU43P_RS19615 (KU43P_38690) exbB 4294969..4295604 (-) 636 WP_317659110.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KU43P_RS19620 (KU43P_38700) comA 4295673..4297901 (-) 2229 WP_317659111.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KU43P_RS19625 (KU43P_38710) - 4298044..4298541 (+) 498 Protein_3882 DUF2062 domain-containing protein -
  KU43P_RS19630 (KU43P_38720) - 4298554..4299333 (-) 780 WP_317659112.1 ABC transporter permease -
  KU43P_RS19635 (KU43P_38730) - 4299330..4300262 (-) 933 WP_317659113.1 ABC transporter ATP-binding protein -
  KU43P_RS19640 (KU43P_38740) - 4300398..4301021 (-) 624 WP_317659114.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 79940.87 Da        Isoelectric Point: 8.8190

>NTDB_id=72436 KU43P_RS19620 WP_317659111.1 4295673..4297901(-) (comA) [Pseudomonas sp. KU43P]
MRTGMLALALGLLCLGLIPALPSVGWLWLLLCGGLLCLCSRGWPVGCFLLGLCWACWSAQEALNQRLAPQLDGRTLWLEG
EVVGLPGQTGQGVRFELAQPQSRRAELPSRLQLSWFDGPPVRSGERWRLAVTLQRPAGLLNPHGPDREAQLLARRIGATG
TVKAGQLLETQAPGWRDALRQRLLAVEANGREAALVALVLGDGSGLARSDWQVLQATGTVHLLVISGQHIGLVAALLYGL
VAVLARWGLWPRRLPWLPWACGLALAAALAYGWLAGAGVPVQRACLMLAVVLLWRLRFRHLGAFFPLLAALDLVLIIEPL
AALLPGFWLSFAAVAILVYCFSARLGGWRPWQAWTRAQWVIAVGLLPALLATGLPVSLSAPLANLVAVPWISLAVLPLAL
LGTLLLPLAGVGEALLWLAGGLLDGLLRALAVLAGWRPAWLPPALPLWAWFLVCLGALLVLLPRGLPLRGLGGVMLLALW
VPKDTLPHGQVEVWHLDVGQGLAVLLRTRHHALLYDAGPARGDVDIGERVVLPTLYKLGVKQLDLMLISHAHADHAGGAL
AVARGLPVARVLSGEAPALAEPLSAQPCVSQDSWEWDGVRFSLWHWDEGQGSNDRSCVLLVEAQGERLLLAGDMEAGAES
AWLADHPVQSIDWLQAPHHGSRSSSTEAFIRATAPRGVMISRGRNNGFGHPHAQVVARYRQHGLAIHDTAREGALRLLLG
SQGEVEGVRAQRRFWRDVTPIP

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=72436 KU43P_RS19620 WP_317659111.1 4295673..4297901(-) (comA) [Pseudomonas sp. KU43P]
ATGCGCACAGGGATGCTTGCGCTGGCACTCGGGCTGTTGTGCCTGGGCCTTATACCCGCATTGCCGTCGGTCGGATGGCT
ATGGCTGCTGCTCTGCGGCGGGCTGCTTTGCCTGTGCTCGCGGGGGTGGCCGGTGGGCTGTTTCCTGCTGGGTTTGTGTT
GGGCCTGCTGGTCGGCGCAGGAGGCGCTGAACCAGCGTCTGGCGCCGCAGCTCGATGGCCGTACGCTGTGGCTGGAGGGC
GAGGTGGTAGGGCTGCCAGGCCAGACCGGACAGGGCGTGCGCTTTGAGTTGGCGCAACCCCAGTCGCGCCGCGCCGAGCT
GCCTTCGCGTCTGCAGCTGAGTTGGTTCGATGGCCCGCCAGTACGATCGGGCGAGCGTTGGCGCCTTGCGGTGACGCTGC
AGCGGCCAGCTGGGTTGCTGAACCCCCACGGGCCTGACCGTGAGGCGCAACTGCTGGCGCGGCGAATTGGCGCAACTGGC
ACGGTCAAGGCCGGCCAGTTGCTTGAAACGCAGGCGCCGGGTTGGCGCGACGCACTGCGCCAGCGTCTGTTGGCCGTCGA
GGCCAATGGCCGGGAAGCGGCGTTGGTGGCGTTGGTGCTCGGCGATGGTTCGGGGTTGGCCCGCAGCGACTGGCAAGTCC
TCCAGGCCACGGGCACCGTGCATTTGCTGGTGATCTCCGGGCAGCATATCGGCCTCGTGGCCGCGCTACTTTACGGGCTC
GTGGCGGTGCTGGCGCGCTGGGGCCTATGGCCGCGGCGCTTGCCTTGGCTGCCATGGGCGTGTGGCCTGGCCCTGGCGGC
GGCGCTGGCCTACGGTTGGTTGGCCGGCGCCGGGGTGCCGGTGCAACGCGCCTGCCTGATGTTGGCGGTGGTGCTGCTGT
GGCGCTTGCGCTTTCGCCACCTGGGAGCGTTCTTCCCCTTGCTGGCAGCGCTTGACCTGGTGCTGATCATCGAGCCGCTG
GCCGCCTTGCTGCCGGGTTTCTGGTTGTCGTTCGCTGCAGTGGCCATCCTTGTCTACTGCTTCAGTGCCCGCCTGGGCGG
CTGGCGCCCATGGCAGGCATGGACCCGCGCCCAGTGGGTGATCGCGGTGGGTTTGCTGCCAGCATTGTTGGCCACCGGGC
TGCCGGTCAGCCTGAGCGCACCGCTGGCCAACCTGGTGGCGGTGCCCTGGATCAGTCTGGCGGTCTTGCCGTTGGCGCTG
CTCGGTACCTTGCTACTGCCGTTGGCAGGCGTTGGCGAGGCGTTGCTGTGGCTGGCGGGAGGGCTGCTGGATGGCCTGCT
GCGGGCGTTGGCGGTCTTGGCGGGCTGGCGCCCGGCTTGGCTGCCGCCGGCCCTGCCGCTCTGGGCCTGGTTCCTGGTCT
GCCTGGGGGCGCTGCTGGTGCTGCTGCCGCGTGGTTTGCCATTGCGCGGCCTGGGTGGCGTCATGTTGTTGGCCCTGTGG
GTGCCGAAAGACACCCTGCCGCACGGGCAGGTGGAGGTCTGGCACCTGGACGTCGGCCAGGGCTTGGCGGTGTTGCTGCG
CACGCGTCATCACGCCTTGCTGTACGACGCGGGCCCGGCGCGGGGCGACGTCGACATTGGCGAGCGTGTGGTGCTGCCGA
CGTTGTACAAGCTGGGTGTGAAGCAACTGGACCTGATGCTGATCAGTCATGCCCACGCCGACCATGCGGGTGGTGCGCTG
GCGGTCGCTCGTGGCCTGCCGGTGGCGCGGGTGCTCAGTGGTGAGGCGCCGGCGCTTGCCGAGCCGTTGTCGGCGCAACC
GTGCGTCAGCCAGGACAGTTGGGAATGGGATGGCGTGCGTTTTTCGCTGTGGCACTGGGACGAAGGGCAGGGCAGCAATG
ATCGCTCTTGTGTGCTGTTGGTCGAAGCGCAGGGCGAGCGCCTGCTGCTGGCCGGTGACATGGAGGCCGGCGCCGAGAGC
GCGTGGCTGGCCGACCATCCGGTGCAATCCATCGATTGGCTGCAGGCGCCGCATCATGGCAGCCGCAGTTCGTCCACCGA
AGCATTCATCCGTGCCACCGCGCCGCGTGGGGTAATGATTTCGCGCGGCCGCAACAATGGCTTCGGCCACCCCCATGCGC
AGGTGGTGGCGCGCTATCGACAGCATGGGTTGGCGATTCATGACACGGCGCGGGAAGGCGCGTTGCGCTTGCTGCTGGGC
AGCCAGGGCGAGGTTGAAGGGGTGCGAGCACAGCGCCGTTTCTGGCGCGACGTGACGCCAATTCCCTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-677)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.805

96.9

0.58

Multiple sequence alignment