Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   KU43P_RS19615 Genome accession   NZ_AP019365
Coordinates   4294969..4295604 (-) Length   211 a.a.
NCBI ID   WP_317659110.1    Uniprot ID   -
Organism   Pseudomonas sp. KU43P     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4289969..4300604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU43P_RS19585 (KU43P_38630) murB 4291061..4292080 (-) 1020 WP_317659105.1 UDP-N-acetylmuramate dehydrogenase -
  KU43P_RS19590 (KU43P_38640) - 4292077..4292541 (-) 465 WP_317659106.1 low molecular weight protein-tyrosine-phosphatase -
  KU43P_RS19595 (KU43P_38650) kdsB 4292541..4293305 (-) 765 WP_317659107.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KU43P_RS19600 (KU43P_38660) - 4293302..4293487 (-) 186 WP_003247142.1 Trm112 family protein -
  KU43P_RS19605 (KU43P_38670) lpxK 4293531..4294538 (-) 1008 WP_317659108.1 tetraacyldisaccharide 4'-kinase -
  KU43P_RS19610 (KU43P_38680) - 4294538..4294972 (-) 435 WP_317659109.1 ExbD/TolR family protein -
  KU43P_RS19615 (KU43P_38690) exbB 4294969..4295604 (-) 636 WP_317659110.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KU43P_RS19620 (KU43P_38700) comA 4295673..4297901 (-) 2229 WP_317659111.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KU43P_RS19625 (KU43P_38710) - 4298044..4298541 (+) 498 Protein_3882 DUF2062 domain-containing protein -
  KU43P_RS19630 (KU43P_38720) - 4298554..4299333 (-) 780 WP_317659112.1 ABC transporter permease -
  KU43P_RS19635 (KU43P_38730) - 4299330..4300262 (-) 933 WP_317659113.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22813.08 Da        Isoelectric Point: 7.3616

>NTDB_id=72435 KU43P_RS19615 WP_317659110.1 4294969..4295604(-) (exbB) [Pseudomonas sp. KU43P]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQVTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=72435 KU43P_RS19615 WP_317659110.1 4294969..4295604(-) (exbB) [Pseudomonas sp. KU43P]
GTGTGGGAATTGGTCAAGTCCGGCGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCCGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGTGTCACGCCGCCGCACCTGCTGGGCCAGGTATGGATGTGGATCAAGGACA
AGCAGCTCACCAGTGACAAGCTCAAGGCCCTGCGCGCCGACTCGCCCCTGGGCGAGATCCTCGCTGCCGGCCTGGCCAAC
TCGCGCCATGGCCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCTCGCGCGTCATTCACGAACTCGAGCGTTACAT
CAGCACCCTCGGTACCATCGCCGCCATGGCCCCGCTGCTCGGCCTGCTGGGCACCGTACTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGTTCGCAGGTGACCGCCAATGCCGCCGTGCTGGCGGGCGGTATCTCCAAAGCCCTGGTCACCACCGCG
GCCGGCCTGATGGTCGGTATCCCTGCCGTGTTCTTCCACCGTTTCCTGCTGCGGCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTGGAAGTCATCCAGGGCGACCGCGAAGTCGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825

Multiple sequence alignment