Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   PYW37_RS06215 Genome accession   NZ_CP118969
Coordinates   1234769..1235824 (-) Length   351 a.a.
NCBI ID   WP_025017072.1    Uniprot ID   -
Organism   Lactococcus lactis strain DSM 20481     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1229769..1240824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW37_RS06200 trmFO 1231458..1232801 (+) 1344 WP_025017071.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  PYW37_RS06205 xerS 1232846..1233916 (-) 1071 WP_003131037.1 tyrosine recombinase XerS Machinery gene
  PYW37_RS06210 - 1234395..1234685 (-) 291 WP_044009676.1 hypothetical protein -
  PYW37_RS06215 xerS 1234769..1235824 (-) 1056 WP_025017072.1 tyrosine recombinase XerS Machinery gene
  PYW37_RS06220 - 1236429..1236632 (-) 204 WP_023189252.1 hypothetical protein -
  PYW37_RS06225 arsB 1236641..1237693 (-) 1053 WP_023189251.1 ACR3 family arsenite efflux transporter -
  PYW37_RS06230 - 1237690..1239369 (-) 1680 WP_025017073.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 40643.43 Da        Isoelectric Point: 9.7797

>NTDB_id=724228 PYW37_RS06215 WP_025017072.1 1234769..1235824(-) (xerS) [Lactococcus lactis strain DSM 20481]
MSENHGYRYNVNKLMLEFPYYVNEFIQSKDTVPLSIASIYSYCLEFRKYLKWMNENNITNHANIKEITLKEMENVTKREL
EAFVLHERLRLESKCGSNTHTSALNRTIAAIKSLYNYLCEQTEDSNGNTYMTRNVSRLIHIRKKSETLHYRAAQLEAKLF
LGDETKAFLKYVEHDYEKSISNRARTSFKKNKVRDLAILSLFLSSGLRCAELVGINLNDLNLETGKVRVMRKEGKKDVVP
IAHFSHKYITDYFESRSSLNTDVEALFITDYNQTIRKISNASINKLVAKYSEAYKVRVTPHTLRHTFATRLYNVSHSQVL
VSNQLGHSSTKPTELYTHIVSAEAKDALKKL

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=724228 PYW37_RS06215 WP_025017072.1 1234769..1235824(-) (xerS) [Lactococcus lactis strain DSM 20481]
ATGTCAGAAAATCATGGTTATCGTTATAATGTAAATAAACTCATGCTTGAGTTTCCCTACTACGTCAATGAGTTTATCCA
GTCTAAGGACACTGTGCCACTGAGTATTGCCTCTATTTACTCTTACTGCTTAGAATTTAGAAAATACTTGAAATGGATGA
ATGAAAATAATATAACGAACCATGCTAACATCAAAGAAATCACTTTGAAAGAAATGGAAAACGTAACGAAACGTGAGCTA
GAAGCTTTTGTACTTCACGAACGACTCCGTTTAGAATCAAAATGTGGTTCTAATACACATACATCAGCATTAAATCGAAC
AATTGCTGCAATAAAGAGCCTATATAATTATCTTTGCGAACAAACCGAAGATAGTAATGGCAATACTTACATGACTAGAA
ATGTTAGCCGGTTAATTCATATCCGAAAAAAAAGCGAAACCTTGCATTACCGTGCAGCTCAACTGGAAGCTAAACTATTT
TTAGGAGACGAAACTAAAGCATTTTTAAAGTATGTTGAACATGACTATGAAAAGTCTATCAGTAATCGTGCAAGAACAAG
TTTTAAGAAAAATAAAGTCAGGGATTTAGCTATATTAAGTCTTTTTTTATCATCTGGATTACGTTGTGCGGAACTTGTAG
GAATCAATCTTAACGATTTAAACCTTGAAACTGGAAAAGTAAGAGTGATGCGCAAAGAAGGCAAGAAGGATGTAGTGCCT
ATTGCTCATTTTTCGCATAAATATATAACAGATTATTTTGAGTCAAGAAGTAGCTTAAATACTGATGTAGAAGCCTTATT
TATCACGGACTATAATCAAACAATTAGAAAAATTTCTAACGCATCGATAAATAAGCTAGTCGCAAAGTATTCAGAAGCCT
ATAAAGTTAGAGTAACCCCTCATACTCTAAGGCATACATTCGCAACAAGACTCTATAATGTCAGTCACTCTCAAGTCCTT
GTCAGCAATCAATTAGGGCACTCTTCAACCAAACCAACTGAGTTATATACCCACATTGTCAGTGCTGAAGCTAAAGATGC
GTTAAAAAAATTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(172-339)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

45.714

99.715

0.456