Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   PYW37_RS06205 Genome accession   NZ_CP118969
Coordinates   1232846..1233916 (-) Length   356 a.a.
NCBI ID   WP_003131037.1    Uniprot ID   Q9CG78
Organism   Lactococcus lactis strain DSM 20481     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1227846..1238916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW37_RS06190 dprA 1228144..1228992 (+) 849 WP_012897825.1 DNA-processing protein DprA Machinery gene
  PYW37_RS06195 topA 1229254..1231386 (+) 2133 WP_023189256.1 type I DNA topoisomerase -
  PYW37_RS06200 trmFO 1231458..1232801 (+) 1344 WP_025017071.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  PYW37_RS06205 xerS 1232846..1233916 (-) 1071 WP_003131037.1 tyrosine recombinase XerS Machinery gene
  PYW37_RS06210 - 1234395..1234685 (-) 291 WP_044009676.1 hypothetical protein -
  PYW37_RS06215 xerS 1234769..1235824 (-) 1056 WP_025017072.1 tyrosine recombinase XerS Machinery gene
  PYW37_RS06220 - 1236429..1236632 (-) 204 WP_023189252.1 hypothetical protein -
  PYW37_RS06225 arsB 1236641..1237693 (-) 1053 WP_023189251.1 ACR3 family arsenite efflux transporter -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41397.21 Da        Isoelectric Point: 9.6568

>NTDB_id=724227 PYW37_RS06205 WP_003131037.1 1232846..1233916(-) (xerS) [Lactococcus lactis strain DSM 20481]
MKREQLIQNIEKLKHIMPSYVLEYYQSKLTIPYSLNTLYEYLKEYERFFSWLVDSGVADVDKITDVSLSVLENLTKRDLE
SFILYLRERPRLNTRSTRYGVSQTTINRTLSALSSLYKYLTEEVENEDGEPYFYRNVMKKVQTKKKSETLASRAENIKGK
LFLGDETQGFLDYIDNEYEKTLSNRARSSFFKNKERDLAIIALILASGIRLSEAVNVDLRDLNLITMVVEVTRKGGKRDA
VPYAPFAKTYFERYLEVRSQRYKTTAKDTAFFVTLYRDVPSRIDPSSVEKLVAKYSQAFKVRVTPHKLRHTLATRLYAQT
NSQVLVSNQLGHASTQVTDLYTHIINEEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=724227 PYW37_RS06205 WP_003131037.1 1232846..1233916(-) (xerS) [Lactococcus lactis strain DSM 20481]
ATGAAACGTGAACAATTAATACAAAATATTGAAAAACTAAAACATATCATGCCTTCTTATGTTTTAGAATATTATCAATC
TAAACTTACTATTCCTTATAGTTTGAATACACTTTATGAATATCTTAAAGAATATGAACGTTTCTTTAGTTGGTTGGTCG
ATTCTGGAGTTGCTGATGTTGATAAGATAACTGATGTTTCCCTCTCTGTTTTAGAAAACTTAACTAAACGAGATTTGGAG
TCATTTATCCTCTATCTTAGGGAGAGACCCCGTTTAAATACGCGCTCTACTCGTTATGGGGTAAGTCAAACAACAATTAA
TCGTACTCTATCTGCTCTTTCTAGTCTTTATAAATACCTTACTGAAGAGGTTGAAAATGAAGATGGTGAGCCTTACTTCT
ATCGTAATGTTATGAAGAAGGTACAGACTAAGAAAAAATCCGAAACTTTAGCTTCTCGTGCTGAGAATATTAAAGGGAAG
CTTTTTTTGGGAGATGAAACTCAAGGTTTTCTTGACTATATTGATAATGAATATGAAAAAACATTATCAAATAGAGCTCG
TTCTAGTTTTTTCAAAAATAAAGAACGTGATTTAGCAATTATTGCACTTATTTTAGCCTCTGGTATTCGTCTTTCTGAGG
CAGTTAATGTAGATTTAAGAGATTTAAATCTTATTACTATGGTTGTTGAGGTGACTCGTAAAGGAGGAAAAAGGGATGCT
GTTCCTTATGCTCCTTTTGCCAAAACTTATTTTGAAAGATACTTGGAAGTACGAAGTCAACGTTATAAGACTACAGCGAA
AGATACGGCATTTTTTGTGACACTTTATAGAGATGTTCCTAGCCGAATAGATCCTTCTAGTGTTGAAAAATTAGTTGCTA
AATATTCTCAAGCTTTTAAAGTGCGAGTTACCCCTCACAAGCTTAGACATACACTTGCGACTCGACTTTATGCTCAAACA
AATTCTCAGGTATTGGTGAGTAATCAGTTAGGGCACGCTTCAACTCAAGTTACAGACCTTTATACTCATATTATCAATGA
AGAGCAAAAAAATGCTTTAGATAATCTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(182-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CG78

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

76.685

100

0.767