Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PXI10_RS06915 Genome accession   NZ_CP118900
Coordinates   1299410..1299958 (+) Length   182 a.a.
NCBI ID   WP_002860190.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BDS5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1294410..1304958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PXI10_RS06880 (PXI10_06880) - 1294600..1295025 (+) 426 WP_002859154.1 GNAT family N-acetyltransferase -
  PXI10_RS06885 (PXI10_06885) - 1295089..1295709 (+) 621 WP_002852938.1 NAD(P)H-dependent oxidoreductase -
  PXI10_RS06890 (PXI10_06890) - 1295709..1296314 (+) 606 WP_002853045.1 NAD(P)H-dependent oxidoreductase -
  PXI10_RS06895 (PXI10_06895) pgsA 1296439..1296975 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PXI10_RS06900 (PXI10_06900) rseP 1296972..1298078 (+) 1107 WP_002867184.1 RIP metalloprotease RseP -
  PXI10_RS06905 (PXI10_06905) - 1298071..1298937 (+) 867 WP_002859152.1 VirK family antimicrobial peptide resistance protein -
  PXI10_RS06910 (PXI10_06910) rpsF 1299024..1299401 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  PXI10_RS06915 (PXI10_06915) ssb 1299410..1299958 (+) 549 WP_002860190.1 single-stranded DNA-binding protein Machinery gene
  PXI10_RS06920 (PXI10_06920) rpsR 1299969..1300229 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  PXI10_RS06925 (PXI10_06925) lon 1300289..1302664 (-) 2376 WP_002853487.1 endopeptidase La -
  PXI10_RS06930 (PXI10_06930) - 1302681..1303328 (-) 648 WP_011049880.1 outer membrane protein assembly factor BamD -
  PXI10_RS06935 (PXI10_06935) fliW 1303489..1303878 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  PXI10_RS06940 (PXI10_06940) proC 1303878..1304609 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  PXI10_RS06945 (PXI10_06945) ctsT 1304606..1304908 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20596.50 Da        Isoelectric Point: 5.0431

>NTDB_id=724150 PXI10_RS06915 WP_002860190.1 1299410..1299958(+) (ssb) [Campylobacter jejuni strain BDS5]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNPQ
HEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=724150 PXI10_RS06915 WP_002860190.1 1299410..1299958(+) (ssb) [Campylobacter jejuni strain BDS5]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGTTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAAGCT
ATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCACAA
CACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.172

100

0.39
  ssb Vibrio cholerae strain A1552

37.5

96.703

0.363